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The map label for this gene is intD [H]

Identifier: 83310590

GI number: 83310590

Start: 1631262

End: 1632227

Strand: Reverse

Name: intD [H]

Synonym: amb1491

Alternate gene names: 83310590

Gene position: 1632227-1631262 (Counterclockwise)

Preceding gene: 83310591

Following gene: 83310589

Centisome position: 32.86

GC content: 63.66

Gene sequence:

>966_bases
GTGCGGATCGTCGATTTCCGAGGAAAATGGTGCGCCGTCGTCCATGTCGGGGGAAAGCGATTCCGCCGGTCCCTCGGAAA
TCTCGACGCCACCCCGGATAATTACCCCGCTGCCCAGCGGGCGTGCGCTGATCTCGAAAGGGCGATCGCTCAGCCGAAGT
CAGACACCATAGCCGATATCGTTGATGCCTATCTGGCCGATACCAAGGCCATCACCTCTGAATACATGCGATGGATGTGG
GGCGTCCTCAAGCCCCATTGCGCAGGCCTCCGCCCCGACCAGATCGATCGGGGGTGGTGCCGGGAATATGCTTCCAAGCG
CGGAAAAGCGCCGGCGACCATCCGCAAGGAAATATCCTTTCTGGCCGCCGCGATCCGCTGGGCGAAGGGAGACGCCGGCG
GCGGAGCGGTCTTCGAACTCCCCTCACCTCCGCCGCCACGGGATCGGTGGTTGACCAGGCCAGAATTCATGCGGCTTCTC
GACGCCGCGCAGCCGCATCCCCATTTGGTGACCTTCCTCCACTTGGCCCTGGCCACCGGGGCGCGCAAGGAAGCCATTCT
CGAACTGACATGGCCACAGGTCGATTTCTCCGCCGGCCGGATCTTCCTGGGAAATAAGCCGGGAGGGAAGGCCCGCGCCG
TGGTCCCCATGACCAAGAGCCTGCGCACCGTCTTGCAGGCGCAGAACCAGCGCCGCGAGGACAGCGGCTATGTGGTCGAA
TATGGCGGGGCCAAGGTCGGGAACATCAAGAAGGCATTCGCCACCGCCGCCCGCAATGCCGGGCTCGATGACGTCACGCC
GCACGACCTACGTCATACCGCCGCCGTTTGGATGGCGGCCGATGGCGTTTCGATGGAGAAAATCGCCCAATACCTGGGGC
ACAGCGACCACAAGATCACCGAAAGGGTCTATGCCCGCTTCTCCCCTGACCACCTCAAGGACGCCGCCGCCGCCCTCGAG
ATATAG

Upstream 100 bases:

>100_bases
CGGACCAGCATGTTTACAATCTGGTCCGCGCGAAAAAGCTCCAGGCCATGCGGCTGGGAAAGCTCATTCGCATCACGATC
CAGGCCGTGGAGGAATTCGA

Downstream 100 bases:

>100_bases
GATATTCCCCCTGGTTCAGATGAACCATTCCGGAGGAAAATAGAGAGAACTGCATTGGCTGTCTTGGTACGATTGGCGCA
ACATTTGGTTATTTTGGCGA

Product: integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRIVDFRGKWCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSDTIADIVDAYLADTKAITSEYMRWMW
GVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISFLAAAIRWAKGDAGGGAVFELPSPPPPRDRWLTRPEFMRLL
DAAQPHPHLVTFLHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVE
YGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDAAAALE
I

Sequences:

>Translated_321_residues
MRIVDFRGKWCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSDTIADIVDAYLADTKAITSEYMRWMW
GVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISFLAAAIRWAKGDAGGGAVFELPSPPPPRDRWLTRPEFMRLL
DAAQPHPHLVTFLHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVE
YGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDAAAALE
I
>Mature_321_residues
MRIVDFRGKWCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSDTIADIVDAYLADTKAITSEYMRWMW
GVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISFLAAAIRWAKGDAGGGAVFELPSPPPPRDRWLTRPEFMRLL
DAAQPHPHLVTFLHLALATGARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVE
YGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKITERVYARFSPDHLKDAAAALE
I

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=221, Percent_Identity=28.0542986425339, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35442; Mature: 35442

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVDFRGKWCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSDTIADI
CEEEECCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
VDAYLADTKAITSEYMRWMWGVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
LAAAIRWAKGDAGGGAVFELPSPPPPRDRWLTRPEFMRLLDAAQPHPHLVTFLHLALATG
HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
ARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVE
CCHHEEEEEECCCEECCCCEEEECCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCEEE
YGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKIT
ECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHH
ERVYARFSPDHLKDAAAALEI
HHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRIVDFRGKWCAVVHVGGKRFRRSLGNLDATPDNYPAAQRACADLERAIAQPKSDTIADI
CEEEECCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
VDAYLADTKAITSEYMRWMWGVLKPHCAGLRPDQIDRGWCREYASKRGKAPATIRKEISF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
LAAAIRWAKGDAGGGAVFELPSPPPPRDRWLTRPEFMRLLDAAQPHPHLVTFLHLALATG
HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
ARKEAILELTWPQVDFSAGRIFLGNKPGGKARAVVPMTKSLRTVLQAQNQRREDSGYVVE
CCHHEEEEEECCCEECCCCEEEECCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCEEE
YGGAKVGNIKKAFATAARNAGLDDVTPHDLRHTAAVWMAADGVSMEKIAQYLGHSDHKIT
ECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHH
ERVYARFSPDHLKDAAAALEI
HHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]