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The map label for this gene is ybdL [C]

Identifier: 83310489

GI number: 83310489

Start: 1508699

End: 1509943

Strand: Reverse

Name: ybdL [C]

Synonym: amb1390

Alternate gene names: 83310489

Gene position: 1509943-1508699 (Counterclockwise)

Preceding gene: 83310492

Following gene: 83310484

Centisome position: 30.4

GC content: 69.64

Gene sequence:

>1245_bases
TTGCCCGCAGGGCTTCAAGAACCCCGAGGGCTGCGACATGGGTACCGATCCGCGCGGCTTCGGCCTGGCCAGCGTGGCAG
GCAAGAAGGAATGACTTTCAAGGCCGCCAGGCGGGGCGCCATCGCCCCCTTCATCGTCATGGACGTGATGCGCGACGCGG
CGGCACGCCAGGCGGCGGGCGCCGACGTGATCCATCTGGAGGTGGGCCAGCCCTCGGGCCAGGCTCCGCCTAAGGTGCTG
GACGCCGCCGCCCGCGCCGTCAGGACCGAGCCCCTGGGCTACACCCTGGCGCTGGGCCGCGATTCCCTGCGCGAGCGGAT
CGCCCGCCATTACCACCAGGCCTATGGGGTGTCGGTGGTGCCTGAACGCGTCTGCGTCACCACCGGTTCTTCCGCCGCCT
TCCTGCTGGCCTTCCTGGCCGCCTTCGAGCCGGGCGACCGGGTGGCCGTGGCAGCGCCGGGCTACCCCGCCTACCGCAAC
ATCCTCGAGTCCCTGGGGGTGGAGTGCGTGCTGGTCCCGGTGGGACCCTCCAGCCGCTGGCAGATCACCGCCGAGGTCCT
GGCCGGCGTCGAGGGCCGGCTGGACGGCGTGGTGGTGGCCAGCCCGTCCAACCCCACCGGCTCCATGCTGTCGGCCCACG
AGGTGGCGGAACTGGCCGGCTGGTGCGAATTGCACGGCATCCGGCTGATCTCCGACGAGATCTATCACGGCATCACCTAT
GGTCGCGCCGCCGCCACCGCCGCCGGCATGGCCGCCGCCCCCCATGCGGTGGTCATCAACAGCTTTTCCAAATACTACGC
CATGACCGGCTGGCGACTGGGCTGGATGGTGCTGCCCGAAGATCTGGCCCGCTCGGTGGAGTGCCTGACCCAGAATCTCT
ACATCTCGCCCCCCACCCTGTCCCAGGTGGCGGCGGAGTCGGTGTTCGACTGCATCGATGAGCTGGAGGCCCGGGTCGCC
GCCTACCGCGCCAACCGCGACATCCTGGTGGCGGAGTTGCCGAAAGCCGGATTCGACCGGCTGGCGCCCTCGGACGGCGC
CTTCTATCTCTATGCAGACGTGTCGGAGATGACCAACGACAGCCGCGAGTTCTGCGCCCGCATGTTGGCCGAGACCGGCG
TGGCCTGCACGCCCGGCGTGGATTTCGATCCCATCGAAGGGCACCGGACCCTGCGCTTCTCCTATGCGGGCTCGGCCGAA
CACATGGCCGAGGCGGCAAGGCGGCTGAAAGCCTGGCGCCGATAG

Upstream 100 bases:

>100_bases
TTGTCGAGACCGGCGCCATTTCCCTGGACCCCGCCCCCCTGGCCAGCCGCGGTCACCAGATCAGCGCCACCCCCATGCCC
AGCCGGGTTGAGGCCATTTA

Downstream 100 bases:

>100_bases
CGAGGCCCCGCAGGCGCAAGGCGACCGAGGGACAAGATCAAGTAATCAGATCGCGGATGGTCTGGGTCATCTCGTCGGCG
GTCTTGAAGACGTTGGAGTT

Product: aspartate aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPAGLQEPRGLRHGYRSARLRPGQRGRQEGMTFKAARRGAIAPFIVMDVMRDAAARQAAGADVIHLEVGQPSGQAPPKVL
DAAARAVRTEPLGYTLALGRDSLRERIARHYHQAYGVSVVPERVCVTTGSSAAFLLAFLAAFEPGDRVAVAAPGYPAYRN
ILESLGVECVLVPVGPSSRWQITAEVLAGVEGRLDGVVVASPSNPTGSMLSAHEVAELAGWCELHGIRLISDEIYHGITY
GRAAATAAGMAAAPHAVVINSFSKYYAMTGWRLGWMVLPEDLARSVECLTQNLYISPPTLSQVAAESVFDCIDELEARVA
AYRANRDILVAELPKAGFDRLAPSDGAFYLYADVSEMTNDSREFCARMLAETGVACTPGVDFDPIEGHRTLRFSYAGSAE
HMAEAARRLKAWRR

Sequences:

>Translated_414_residues
MPAGLQEPRGLRHGYRSARLRPGQRGRQEGMTFKAARRGAIAPFIVMDVMRDAAARQAAGADVIHLEVGQPSGQAPPKVL
DAAARAVRTEPLGYTLALGRDSLRERIARHYHQAYGVSVVPERVCVTTGSSAAFLLAFLAAFEPGDRVAVAAPGYPAYRN
ILESLGVECVLVPVGPSSRWQITAEVLAGVEGRLDGVVVASPSNPTGSMLSAHEVAELAGWCELHGIRLISDEIYHGITY
GRAAATAAGMAAAPHAVVINSFSKYYAMTGWRLGWMVLPEDLARSVECLTQNLYISPPTLSQVAAESVFDCIDELEARVA
AYRANRDILVAELPKAGFDRLAPSDGAFYLYADVSEMTNDSREFCARMLAETGVACTPGVDFDPIEGHRTLRFSYAGSAE
HMAEAARRLKAWRR
>Mature_413_residues
PAGLQEPRGLRHGYRSARLRPGQRGRQEGMTFKAARRGAIAPFIVMDVMRDAAARQAAGADVIHLEVGQPSGQAPPKVLD
AAARAVRTEPLGYTLALGRDSLRERIARHYHQAYGVSVVPERVCVTTGSSAAFLLAFLAAFEPGDRVAVAAPGYPAYRNI
LESLGVECVLVPVGPSSRWQITAEVLAGVEGRLDGVVVASPSNPTGSMLSAHEVAELAGWCELHGIRLISDEIYHGITYG
RAAATAAGMAAAPHAVVINSFSKYYAMTGWRLGWMVLPEDLARSVECLTQNLYISPPTLSQVAAESVFDCIDELEARVAA
YRANRDILVAELPKAGFDRLAPSDGAFYLYADVSEMTNDSREFCARMLAETGVACTPGVDFDPIEGHRTLRFSYAGSAEH
MAEAARRLKAWRR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=399, Percent_Identity=25.062656641604, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI169881279, Length=399, Percent_Identity=25.062656641604, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI56713256, Length=396, Percent_Identity=23.2323232323232, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI56713254, Length=396, Percent_Identity=23.2323232323232, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI4507369, Length=389, Percent_Identity=25.4498714652956, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI169881281, Length=267, Percent_Identity=24.7191011235955, Blast_Score=96, Evalue=6e-20,
Organism=Escherichia coli, GI1786816, Length=361, Percent_Identity=30.7479224376731, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788722, Length=383, Percent_Identity=26.6318537859008, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788627, Length=236, Percent_Identity=30.5084745762712, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788332, Length=232, Percent_Identity=30.6034482758621, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1790797, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787710, Length=181, Percent_Identity=29.2817679558011, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994476, Length=396, Percent_Identity=27.5252525252525, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71994472, Length=396, Percent_Identity=27.5252525252525, Blast_Score=111, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17567663, Length=418, Percent_Identity=23.444976076555, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17567369, Length=312, Percent_Identity=26.6025641025641, Blast_Score=96, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6322401, Length=390, Percent_Identity=24.6153846153846, Blast_Score=115, Evalue=9e-27,
Organism=Drosophila melanogaster, GI18859735, Length=398, Percent_Identity=23.6180904522613, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28573069, Length=389, Percent_Identity=22.879177377892, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24646114, Length=389, Percent_Identity=22.879177377892, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28573067, Length=389, Percent_Identity=22.879177377892, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28573065, Length=389, Percent_Identity=22.879177377892, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 44641; Mature: 44510

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAGLQEPRGLRHGYRSARLRPGQRGRQEGMTFKAARRGAIAPFIVMDVMRDAAARQAAG
CCCCCCCCCHHHHHHHHCCCCCCCCHHHHCCEEHHHHCCCCHHHHHHHHHHHHHHHHHCC
ADVIHLEVGQPSGQAPPKVLDAAARAVRTEPLGYTLALGRDSLRERIARHYHQAYGVSVV
CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCC
PERVCVTTGSSAAFLLAFLAAFEPGDRVAVAAPGYPAYRNILESLGVECVLVPVGPSSRW
CCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCC
QITAEVLAGVEGRLDGVVVASPSNPTGSMLSAHEVAELAGWCELHGIRLISDEIYHGITY
EEEHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHCHHH
GRAAATAAGMAAAPHAVVINSFSKYYAMTGWRLGWMVLPEDLARSVECLTQNLYISPPTL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEECCCCH
SQVAAESVFDCIDELEARVAAYRANRDILVAELPKAGFDRLAPSDGAFYLYADVSEMTND
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCEEEEEEHHHHCCC
SREFCARMLAETGVACTPGVDFDPIEGHRTLRFSYAGSAEHMAEAARRLKAWRR
HHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAGLQEPRGLRHGYRSARLRPGQRGRQEGMTFKAARRGAIAPFIVMDVMRDAAARQAAG
CCCCCCCCHHHHHHHHCCCCCCCCHHHHCCEEHHHHCCCCHHHHHHHHHHHHHHHHHCC
ADVIHLEVGQPSGQAPPKVLDAAARAVRTEPLGYTLALGRDSLRERIARHYHQAYGVSVV
CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCC
PERVCVTTGSSAAFLLAFLAAFEPGDRVAVAAPGYPAYRNILESLGVECVLVPVGPSSRW
CCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCC
QITAEVLAGVEGRLDGVVVASPSNPTGSMLSAHEVAELAGWCELHGIRLISDEIYHGITY
EEEHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHCHHH
GRAAATAAGMAAAPHAVVINSFSKYYAMTGWRLGWMVLPEDLARSVECLTQNLYISPPTL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCEECCCCH
SQVAAESVFDCIDELEARVAAYRANRDILVAELPKAGFDRLAPSDGAFYLYADVSEMTND
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCEEEEEEHHHHCCC
SREFCARMLAETGVACTPGVDFDPIEGHRTLRFSYAGSAEHMAEAARRLKAWRR
HHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]