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The map label for this gene is lpsD [H]

Identifier: 83310366

GI number: 83310366

Start: 1352045

End: 1353073

Strand: Reverse

Name: lpsD [H]

Synonym: amb1267

Alternate gene names: 83310366

Gene position: 1353073-1352045 (Counterclockwise)

Preceding gene: 83310368

Following gene: 83310365

Centisome position: 27.24

GC content: 69.68

Gene sequence:

>1029_bases
ATGACGCGGCTGCTTCAGGCCATGGCCGGAGCCCCCCATGGCGGGGCCGAGGCCTTCTTCGAGCGCCTCGCCCCCGCCCT
GTCCCGGGCCGGCGTGACCCAGCGCGTGCTGATCCGCGACAACCCCAAGCGCGCCGCCCTGCTGCGCGCCCAGGGGGTCG
AGGTGGTGGAAGCCCCATTCGGCGGCGCCCTGGATCTGGTCACCCACTGGCGCTTTCGCCGCGAGGTGAAGGACTTCCAG
CCCGATATCGTGCTGACCTGGATGAACCGGGCGTCGCGCTTCGTGCCCAAGGGCCGCCACACCACGGTGGGACGCCTCGG
CGGCTATTACGACCTCAAGTATTACCGCCAGTGCGACCACCTGATCGGCAACACCCCGGATATCCGCGACTGGATCATCG
CCAAAGGTCGACCGACCGGTCAGGTTCACTACGTTCCCAATTTCGTCGCCGACACCAAGGGCACCCAGCCGCTGTCGCGG
GCGTCGTTCGACACGCCGCCCGGCGCACCTTTGATCGTCGCCATGGGCCGCCTGCATGCCAACAAGGCCTTCGACGTCCT
GCTCCGCGCGGTGGAACAGGTGCACGATTGCTATCTGTGGATTGCCGGCGAAGGCCCCGAGCGCGCCGAGCTGGAAGCCC
TGGCCGCCCATCTGTCGGTCAAGCCCCGGGTGCGATTCCTGGGCTGGCGCGACGACGTGGCGGCGCTGTACGCCACCGGC
GACCTGTTCGTCTGCCCTTCGCGCCACGAGCCGCTGGGCAATGTGGTGATCGAGGCCTGGGCGGCCGCCCGGCCGGTGAT
CGCAACAGCCTCCCAGGGGCCAAGGCAGCTGATCACCGACGGAACCGACGGCGTGCTGGTGCCGGTGGATGACGGCACCG
CCCTGGCCGCGGCCATCCGCCGCCTGCTGGCCCAGCCCGACACCGCCCGCGCCCTGGCCGAGGCCGGTCGCGCCGCCTAT
GAACGCCAGTTCACGGAGGCCGCCGTGGTGGCGCGCTATCTCGAATTCTTCGACAAGGTGAAGCGATGA

Upstream 100 bases:

>100_bases
CCGACCAGTCAGTGCAACAAGCCATGAGTGCCGAGGCCCGTGCCGCCTGGAAGGGCCGTACCTGGGACGGCGTGGCCGCC
ACCCTGGAAGGCTGGCTGAA

Downstream 100 bases:

>100_bases
CCTCGCCTGTCATCCTGACGACCATCGGGAGGAAGGATCTCGTCCTGATCCCATGCGTCAGAATCGGCACCAGCGGAGCA
GGCGGAGATCCCTCGCCGAC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTRLLQAMAGAPHGGAEAFFERLAPALSRAGVTQRVLIRDNPKRAALLRAQGVEVVEAPFGGALDLVTHWRFRREVKDFQ
PDIVLTWMNRASRFVPKGRHTTVGRLGGYYDLKYYRQCDHLIGNTPDIRDWIIAKGRPTGQVHYVPNFVADTKGTQPLSR
ASFDTPPGAPLIVAMGRLHANKAFDVLLRAVEQVHDCYLWIAGEGPERAELEALAAHLSVKPRVRFLGWRDDVAALYATG
DLFVCPSRHEPLGNVVIEAWAAARPVIATASQGPRQLITDGTDGVLVPVDDGTALAAAIRRLLAQPDTARALAEAGRAAY
ERQFTEAAVVARYLEFFDKVKR

Sequences:

>Translated_342_residues
MTRLLQAMAGAPHGGAEAFFERLAPALSRAGVTQRVLIRDNPKRAALLRAQGVEVVEAPFGGALDLVTHWRFRREVKDFQ
PDIVLTWMNRASRFVPKGRHTTVGRLGGYYDLKYYRQCDHLIGNTPDIRDWIIAKGRPTGQVHYVPNFVADTKGTQPLSR
ASFDTPPGAPLIVAMGRLHANKAFDVLLRAVEQVHDCYLWIAGEGPERAELEALAAHLSVKPRVRFLGWRDDVAALYATG
DLFVCPSRHEPLGNVVIEAWAAARPVIATASQGPRQLITDGTDGVLVPVDDGTALAAAIRRLLAQPDTARALAEAGRAAY
ERQFTEAAVVARYLEFFDKVKR
>Mature_341_residues
TRLLQAMAGAPHGGAEAFFERLAPALSRAGVTQRVLIRDNPKRAALLRAQGVEVVEAPFGGALDLVTHWRFRREVKDFQP
DIVLTWMNRASRFVPKGRHTTVGRLGGYYDLKYYRQCDHLIGNTPDIRDWIIAKGRPTGQVHYVPNFVADTKGTQPLSRA
SFDTPPGAPLIVAMGRLHANKAFDVLLRAVEQVHDCYLWIAGEGPERAELEALAAHLSVKPRVRFLGWRDDVAALYATGD
LFVCPSRHEPLGNVVIEAWAAARPVIATASQGPRQLITDGTDGVLVPVDDGTALAAAIRRLLAQPDTARALAEAGRAAYE
RQFTEAAVVARYLEFFDKVKR

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI1790061, Length=146, Percent_Identity=32.1917808219178, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 37660; Mature: 37528

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLLQAMAGAPHGGAEAFFERLAPALSRAGVTQRVLIRDNPKRAALLRAQGVEVVEAPF
CHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEECCC
GGALDLVTHWRFRREVKDFQPDIVLTWMNRASRFVPKGRHTTVGRLGGYYDLKYYRQCDH
CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHCCCEEHHHHHHHHHH
LIGNTPDIRDWIIAKGRPTGQVHYVPNFVADTKGTQPLSRASFDTPPGAPLIVAMGRLHA
HHCCCCCCHHHEEECCCCCCEEEECCCHHCCCCCCCCHHHCCCCCCCCCHHEEEHHHHHC
NKAFDVLLRAVEQVHDCYLWIAGEGPERAELEALAAHLSVKPRVRFLGWRDDVAALYATG
HHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECC
DLFVCPSRHEPLGNVVIEAWAAARPVIATASQGPRQLITDGTDGVLVPVDDGTALAAAIR
CEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCEEEECCCCHHHHHHHH
RLLAQPDTARALAEAGRAAYERQFTEAAVVARYLEFFDKVKR
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRLLQAMAGAPHGGAEAFFERLAPALSRAGVTQRVLIRDNPKRAALLRAQGVEVVEAPF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCEEEECCC
GGALDLVTHWRFRREVKDFQPDIVLTWMNRASRFVPKGRHTTVGRLGGYYDLKYYRQCDH
CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHCCCEEHHHHHHHHHH
LIGNTPDIRDWIIAKGRPTGQVHYVPNFVADTKGTQPLSRASFDTPPGAPLIVAMGRLHA
HHCCCCCCHHHEEECCCCCCEEEECCCHHCCCCCCCCHHHCCCCCCCCCHHEEEHHHHHC
NKAFDVLLRAVEQVHDCYLWIAGEGPERAELEALAAHLSVKPRVRFLGWRDDVAALYATG
HHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECC
DLFVCPSRHEPLGNVVIEAWAAARPVIATASQGPRQLITDGTDGVLVPVDDGTALAAAIR
CEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHCCCCCCEEEECCCCHHHHHHHH
RLLAQPDTARALAEAGRAAYERQFTEAAVVARYLEFFDKVKR
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]