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The map label for this gene is yjcC [C]

Identifier: 83310205

GI number: 83310205

Start: 1172769

End: 1174514

Strand: Reverse

Name: yjcC [C]

Synonym: amb1106

Alternate gene names: 83310205

Gene position: 1174514-1172769 (Counterclockwise)

Preceding gene: 83310206

Following gene: 83310204

Centisome position: 23.65

GC content: 65.69

Gene sequence:

>1746_bases
ATGTCCCATGATATCGAACTGAACCCCCGATTTCCCGGCCTTCACGTGGCGTTTCAGGCCATCGTGAACGTCCATACCGG
GCAATGCTTCGGTCACGAGGCCTTGCTGCGCGGCTGGGAGGGCAGCCCGCAGGAGAGCGCCACCTGGTTGCTCGACCGAT
GCCATGCGGCCGGCCACCTGCTGGACCTGGAGATCGCCGTGCGCGCCACCATCGGCGAGATGGCCCCCCGCTACCCCACC
CTCACCCAGGGCGCCCTCTTCCTCAATCTGGACGCACGTGCCGCCGGTCATCTGGACAGATTGCTGGGCGACGTCCAGGG
TGCCCTGCAGACCGCCTTCGCCCATGTGGTGACCGAAATCGCCGGCCTGCCGGCCGAGAGTGACGATTCGGCCTATCCCG
CCAAGCTCATGCGGCGGGGCGGCGGCATGGTGGCGGTGGACCGGTTCGGAGCCATGCCCCATTCCCTGGCGCTGCTCACC
GGCTGCAACCCCGACTTCATCAAGATCGACCGCACCCTGATCGCCGGCCTGGACAGCGACGCCCGCAAGCGCGTGGTCCT
GGCCCAGATCATCGGAATGGCCCATACCCTGGGCGTCGAGGTCATCGCCGTCGGCATCGAGAACGGCCGCGAGCTGATGG
TCTGCCGGGAACTGGGACTGGATCTGGTTCAGGGCAACTTCATCAGCCCGCCCCAGCTTGACCCGCTGCGTCTCGCCGCC
AGCTATCCCCATGTGGAGGTGCTGGCCCGCGACGACCGCCGCCAGCGGCAGATCGACCAGAAATGGGTGCTGCAGCAGAT
GGATCAGGTTCCGGCCATCCTGGCCGACGCCCCCATGAGCGAGATCTTCGAACGCTTCGCCCGGTCGTCCGACAATGGCT
ATGCCCCGGTGGTCGACCATTCCGGACGGCCGCTCGGCATCGTGCGCGAACGCGACACCAAGAACTACGCCTATTCCAGC
TTCGGCAAGGACCTGATCGCCAACAAATCGCTGGGACGCCAGGTGCGCGACTTCATCGTGCGCTGCCCCATTGCCGATAT
CGGCACACCCCTGGATCAGATGCTGGCCCTTTATGCCGCCGTGGAGGAGACCGACGGCATCCTGCTCAGCGATCACATGG
TCTATCGCGGTTTCTTAAGCGCCCGCTCGCTGATCCGTGCCATGCACGAAAAGACCCTGGCGCGGGCCAGAGACGAGAAT
CCCTTAAGCAAGTTGCCGGGCAACGTGGTCATCAACGAATACGTGGCCGATTGCGTTACCGGCGGGGCCGGGGCGGTGCT
GGCCTACATCGATTTCGACAATTTCAAGCCGTTCAACGACACCTACGGCTTCCGCCAGGGCGACCGGGCCATCCTGCTGT
TCGCCGAACTGTGCCGCAAGCGGGCCGATCCCCAGAGCTGGTTCGTGGGCCATATCGGCGGCGACGATTTCTTCGTCGGC
ATCACCCACACCAACGGCGCCGAGGCCGCCCTGGCCATCGGGGAGCTGATCGGACGCTTCGCCTCCGACGCCGAAAGCTT
CTACGACCAGGATGCGCGGCAGCGCCGCTGCATCACCGCCCAGGACCGCGAGGGACACGTCAAGTCCTTCCCCCTGCTGT
CGGCCAGCGCCGTACTGTTCGTCCTGCCGCCCGGATGCACCGACATCACCGTGGATGACGTGGCCTCGGCCATTGCCGCG
CGCAAGAAGGAGGCCAAGGAGACGCCCTCCAAGCTGGTGGTCATCGAGCCCGCTCCGGCAGGTTAA

Upstream 100 bases:

>100_bases
TCTGACGGCCCCTCGCTCCGCGTGTTTGTTCATGACCGATTTGGCATGATGCCGCCGTGCGGTCGCCGTTTGGGGCGGCC
GCGGATCACAAAGCCGCGTC

Downstream 100 bases:

>100_bases
TCGAACATTAACCCGCCGGCCCGCCGCCCCGCGCTATTGTTGCGCCGCAGCATGCCGCTGCTGCTTCCTCGATGAAAGGG
ATGGCCATGGGGATCTCCGT

Product: EAL domain-containing protein

Products: NA

Alternate protein names: Diguanylate Phosphodiesterase; Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL Domain-Containing Protein; EAL/GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain-Containing Protein; Signal Transduction Protein; EAL Domain Protein; GGDEF Domain Protein; Sensor Protein; Signaling Protein; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; Signal Protein; Sensory Box/GGDEF Family Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; EAL-Domain Diguanylate Phosphodiesterase; Ggdef Family Protein; Two-Component System Response Regulator Receiver; Response Regulator; Response Regulator Receiver; Sensory Box Histidine Kinase/Response Regulator; Ggdef Domain Protein; Diguanylate Cyclase/Phosphodiesterase Family Protein; EAL Domain Proteni; Diguanylate Cyclase Domains; FOG EAL Domain Protein; Cyclic-Di-GMP Regulatory Protein; EAL Domain/GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain; Diguanylate Phosphodiesterase With GAF Sensor; EAL Domain/GGDEF Domain Protein; Diguanylate Phosphodiesterase Protein; CheY-Like Response Regulator Modulated Diguanylate Cyclase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; EAL Domain-Containing; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Methyl-Accepting Chemotaxis Sensory Transducer; Eal/Ggdef Domain Protein

Number of amino acids: Translated: 581; Mature: 580

Protein sequence:

>581_residues
MSHDIELNPRFPGLHVAFQAIVNVHTGQCFGHEALLRGWEGSPQESATWLLDRCHAAGHLLDLEIAVRATIGEMAPRYPT
LTQGALFLNLDARAAGHLDRLLGDVQGALQTAFAHVVTEIAGLPAESDDSAYPAKLMRRGGGMVAVDRFGAMPHSLALLT
GCNPDFIKIDRTLIAGLDSDARKRVVLAQIIGMAHTLGVEVIAVGIENGRELMVCRELGLDLVQGNFISPPQLDPLRLAA
SYPHVEVLARDDRRQRQIDQKWVLQQMDQVPAILADAPMSEIFERFARSSDNGYAPVVDHSGRPLGIVRERDTKNYAYSS
FGKDLIANKSLGRQVRDFIVRCPIADIGTPLDQMLALYAAVEETDGILLSDHMVYRGFLSARSLIRAMHEKTLARARDEN
PLSKLPGNVVINEYVADCVTGGAGAVLAYIDFDNFKPFNDTYGFRQGDRAILLFAELCRKRADPQSWFVGHIGGDDFFVG
ITHTNGAEAALAIGELIGRFASDAESFYDQDARQRRCITAQDREGHVKSFPLLSASAVLFVLPPGCTDITVDDVASAIAA
RKKEAKETPSKLVVIEPAPAG

Sequences:

>Translated_581_residues
MSHDIELNPRFPGLHVAFQAIVNVHTGQCFGHEALLRGWEGSPQESATWLLDRCHAAGHLLDLEIAVRATIGEMAPRYPT
LTQGALFLNLDARAAGHLDRLLGDVQGALQTAFAHVVTEIAGLPAESDDSAYPAKLMRRGGGMVAVDRFGAMPHSLALLT
GCNPDFIKIDRTLIAGLDSDARKRVVLAQIIGMAHTLGVEVIAVGIENGRELMVCRELGLDLVQGNFISPPQLDPLRLAA
SYPHVEVLARDDRRQRQIDQKWVLQQMDQVPAILADAPMSEIFERFARSSDNGYAPVVDHSGRPLGIVRERDTKNYAYSS
FGKDLIANKSLGRQVRDFIVRCPIADIGTPLDQMLALYAAVEETDGILLSDHMVYRGFLSARSLIRAMHEKTLARARDEN
PLSKLPGNVVINEYVADCVTGGAGAVLAYIDFDNFKPFNDTYGFRQGDRAILLFAELCRKRADPQSWFVGHIGGDDFFVG
ITHTNGAEAALAIGELIGRFASDAESFYDQDARQRRCITAQDREGHVKSFPLLSASAVLFVLPPGCTDITVDDVASAIAA
RKKEAKETPSKLVVIEPAPAG
>Mature_580_residues
SHDIELNPRFPGLHVAFQAIVNVHTGQCFGHEALLRGWEGSPQESATWLLDRCHAAGHLLDLEIAVRATIGEMAPRYPTL
TQGALFLNLDARAAGHLDRLLGDVQGALQTAFAHVVTEIAGLPAESDDSAYPAKLMRRGGGMVAVDRFGAMPHSLALLTG
CNPDFIKIDRTLIAGLDSDARKRVVLAQIIGMAHTLGVEVIAVGIENGRELMVCRELGLDLVQGNFISPPQLDPLRLAAS
YPHVEVLARDDRRQRQIDQKWVLQQMDQVPAILADAPMSEIFERFARSSDNGYAPVVDHSGRPLGIVRERDTKNYAYSSF
GKDLIANKSLGRQVRDFIVRCPIADIGTPLDQMLALYAAVEETDGILLSDHMVYRGFLSARSLIRAMHEKTLARARDENP
LSKLPGNVVINEYVADCVTGGAGAVLAYIDFDNFKPFNDTYGFRQGDRAILLFAELCRKRADPQSWFVGHIGGDDFFVGI
THTNGAEAALAIGELIGRFASDAESFYDQDARQRRCITAQDREGHVKSFPLLSASAVLFVLPPGCTDITVDDVASAIAAR
KKEAKETPSKLVVIEPAPAG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=28.2700421940928, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081980, Length=236, Percent_Identity=27.5423728813559, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63350; Mature: 63219

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDIELNPRFPGLHVAFQAIVNVHTGQCFGHEALLRGWEGSPQESATWLLDRCHAAGHL
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCE
LDLEIAVRATIGEMAPRYPTLTQGALFLNLDARAAGHLDRLLGDVQGALQTAFAHVVTEI
EEEEHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLPAESDDSAYPAKLMRRGGGMVAVDRFGAMPHSLALLTGCNPDFIKIDRTLIAGLDSD
HCCCCCCCCCCCHHHHHHCCCCEEEEHHHCCCCCCEEEEECCCCCCEEECHHHHCCCCCH
ARKRVVLAQIIGMAHTLGVEVIAVGIENGRELMVCRELGLDLVQGNFISPPQLDPLRLAA
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEHHCCCCEECCCCCCCCCCCHHHHCC
SYPHVEVLARDDRRQRQIDQKWVLQQMDQVPAILADAPMSEIFERFARSSDNGYAPVVDH
CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCEECC
SGRPLGIVRERDTKNYAYSSFGKDLIANKSLGRQVRDFIVRCPIADIGTPLDQMLALYAA
CCCCEEEEECCCCCCHHHHHHCHHHHHCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHH
VEETDGILLSDHMVYRGFLSARSLIRAMHEKTLARARDENPLSKLPGNVVINEYVADCVT
HHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEHHHHHHHHHC
GGAGAVLAYIDFDNFKPFNDTYGFRQGDRAILLFAELCRKRADPQSWFVGHIGGDDFFVG
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCEEEEEECCCEEEEE
ITHTNGAEAALAIGELIGRFASDAESFYDQDARQRRCITAQDREGHVKSFPLLSASAVLF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
VLPPGCTDITVDDVASAIAARKKEAKETPSKLVVIEPAPAG
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure 
SHDIELNPRFPGLHVAFQAIVNVHTGQCFGHEALLRGWEGSPQESATWLLDRCHAAGHL
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCE
LDLEIAVRATIGEMAPRYPTLTQGALFLNLDARAAGHLDRLLGDVQGALQTAFAHVVTEI
EEEEHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLPAESDDSAYPAKLMRRGGGMVAVDRFGAMPHSLALLTGCNPDFIKIDRTLIAGLDSD
HCCCCCCCCCCCHHHHHHCCCCEEEEHHHCCCCCCEEEEECCCCCCEEECHHHHCCCCCH
ARKRVVLAQIIGMAHTLGVEVIAVGIENGRELMVCRELGLDLVQGNFISPPQLDPLRLAA
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEHHCCCCEECCCCCCCCCCCHHHHCC
SYPHVEVLARDDRRQRQIDQKWVLQQMDQVPAILADAPMSEIFERFARSSDNGYAPVVDH
CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCCCCEECC
SGRPLGIVRERDTKNYAYSSFGKDLIANKSLGRQVRDFIVRCPIADIGTPLDQMLALYAA
CCCCEEEEECCCCCCHHHHHHCHHHHHCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHH
VEETDGILLSDHMVYRGFLSARSLIRAMHEKTLARARDENPLSKLPGNVVINEYVADCVT
HHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEHHHHHHHHHC
GGAGAVLAYIDFDNFKPFNDTYGFRQGDRAILLFAELCRKRADPQSWFVGHIGGDDFFVG
CCCCEEEEEEECCCCCCCCCCCCCCCCCHHEEHHHHHHHHHCCCCCEEEEEECCCEEEEE
ITHTNGAEAALAIGELIGRFASDAESFYDQDARQRRCITAQDREGHVKSFPLLSASAVLF
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
VLPPGCTDITVDDVASAIAARKKEAKETPSKLVVIEPAPAG
EECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA