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The map label for this gene is yagA [C]

Identifier: 83310024

GI number: 83310024

Start: 993672

End: 994190

Strand: Reverse

Name: yagA [C]

Synonym: amb0925

Alternate gene names: 83310024

Gene position: 994190-993672 (Counterclockwise)

Preceding gene: 83310028

Following gene: 83310020

Centisome position: 20.02

GC content: 62.62

Gene sequence:

>519_bases
GTGCTCAATATCGTCGATGACGTGACGCGGGAATGTTTGGCATCGGTTCCCGACACATCGATCTCCGGCGTGCGGGTAGC
CCGCGAACTGGCGGCGCTGATCGCCAGACGGGGAACGCCGGGGATGATCGTCTCCGACAACGGCACCGAACTGACCTCCA
ATGCCGTGCTGAAATGGACGCAGGACCATTGCATACAATGGCACCACATCGCTCCCGGCAAGCCCATGCAAAACGGCTAC
AGCGAGAGCTTCAATGGCCGGATGCGCGATGAACTGCTCAACGAGACGGTCTTCACCAGCATGGCACAGGCTCGCGCCGT
CATTGTCGCCTGGGTGGCCGACTACAACACCGCCAGGCCGCATTCAGCCCTGGGATACCAAACCCCGGCGGCTCACGCCG
CCAAACTCAAGGCAATGGGGTCGGCCTCTCCGCCCCTCCGGGGCTCCAAGCCCGACCCCATTGCTCACCCCGCGCCAGAC
GGCGTAATTTTGGCCGAGACTCTACTTTCAGCCGGATGA

Upstream 100 bases:

>100_bases
CGCCGATCTTGGTTGAGGCCAAGCCCAATGCCCGCTGGTCGCTGGTCGCTGGTCGCTGGATTTTATCCATGATCAGTTGG
AGAATGGACGGCGTTTCCGC

Downstream 100 bases:

>100_bases
AAGTTCCAAGGCAGGTCACGTGCGGCGTATTCCGGGGCGACGAGAGGGTAATCCCTGGGCAAAGCCCACTTGGCCCGGTA
CTCGTCGGCAGTCAGCCCAT

Product: transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLNIVDDVTRECLASVPDTSISGVRVARELAALIARRGTPGMIVSDNGTELTSNAVLKWTQDHCIQWHHIAPGKPMQNGY
SESFNGRMRDELLNETVFTSMAQARAVIVAWVADYNTARPHSALGYQTPAAHAAKLKAMGSASPPLRGSKPDPIAHPAPD
GVILAETLLSAG

Sequences:

>Translated_172_residues
MLNIVDDVTRECLASVPDTSISGVRVARELAALIARRGTPGMIVSDNGTELTSNAVLKWTQDHCIQWHHIAPGKPMQNGY
SESFNGRMRDELLNETVFTSMAQARAVIVAWVADYNTARPHSALGYQTPAAHAAKLKAMGSASPPLRGSKPDPIAHPAPD
GVILAETLLSAG
>Mature_172_residues
MLNIVDDVTRECLASVPDTSISGVRVARELAALIARRGTPGMIVSDNGTELTSNAVLKWTQDHCIQWHHIAPGKPMQNGY
SESFNGRMRDELLNETVFTSMAQARAVIVAWVADYNTARPHSALGYQTPAAHAAKLKAMGSASPPLRGSKPDPIAHPAPD
GVILAETLLSAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 18351; Mature: 18351

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIVDDVTRECLASVPDTSISGVRVARELAALIARRGTPGMIVSDNGTELTSNAVLKWT
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCHHEEEC
QDHCIQWHHIAPGKPMQNGYSESFNGRMRDELLNETVFTSMAQARAVIVAWVADYNTARP
HHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSALGYQTPAAHAAKLKAMGSASPPLRGSKPDPIAHPAPDGVILAETLLSAG
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLNIVDDVTRECLASVPDTSISGVRVARELAALIARRGTPGMIVSDNGTELTSNAVLKWT
CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEECCCHHEEEC
QDHCIQWHHIAPGKPMQNGYSESFNGRMRDELLNETVFTSMAQARAVIVAWVADYNTARP
HHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HSALGYQTPAAHAAKLKAMGSASPPLRGSKPDPIAHPAPDGVILAETLLSAG
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]