| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is hpaG [H]
Identifier: 83309906
GI number: 83309906
Start: 864725
End: 865501
Strand: Reverse
Name: hpaG [H]
Synonym: amb0807
Alternate gene names: 83309906
Gene position: 865501-864725 (Counterclockwise)
Preceding gene: 83309907
Following gene: 83309905
Centisome position: 17.42
GC content: 71.81
Gene sequence:
>777_bases ATGCGTCACGCCCGCATCAACTTCCCCGGCACCGCCGCGCCCATCAGCGGAGCCGTCACCCCCGACGGCACCGGCCTGGA CCTGGGCGGCCGAATCCTCCCCATCCCCCCGGGCGGCTTCGCGCCCCCGGTGGAGGGCTGGATCTACGGCCCGCTGCTCA ACGAGCGCTCCACCTGGGAGCGGTTCGGCGACAAGCTCAACGCCGATCCCTACAAGGCGCCGCCCACCGTGCCGGTGCTG TACTTCAAGCCGCGGAACACCCATCTCGGCCATGGCGGCACGGTGCGGCTGCCCGCCACTGCCGCACGCGTCGAGCTGGG CGCCTCGCTGGGCCTGGTGTTCGGCCGCCAGACGGCGCGGGCCGCCGAGGCCGAGGCCCTGGACAACGTCACCGGCCTGA CCATCGTGCTGGACCTGTCGGTGCCCAACGACAGCGTCTATCGCCCGCCGGTGCAGGAAAAGTGCTTCGACGGCGCCTGC CCGGTCGGCCCCTGGGTGGTGGACAAGGCGGACCTGCCCGCCGACCTCTCCTCCCTGTCCATCCGCACCTATGTCAACGG CGACAAGGTCGCCGAGCGCCGGCTGGACGACCTCTACCGCTCTCCCGCCAAGCTGGTGGCCGAGGTCACCGACTTCATGG CCCTGTCGGCAGGCGACGTCCTGACCCTGGGCTATCCGGTGGGCGCGGTGCCCACCGCCGGACGCGGCGACACGGTGCGG GTCGAGATCGACGGCATCGGCGCCCTGGACTGCACCATCGCGGAGGAATCGGCATGA
Upstream 100 bases:
>100_bases CCTGGCCTCGGACTTCATCCGCATCGTGGTCCTGGTGTTCTTCCCGCCCATGGCCCTGTGGCTGGTCCACGTCACCGGCT GATCCCTGAGGAAAGCAATC
Downstream 100 bases:
>100_bases AGCGCGCCCGAATCGCCTATAACGGCGCCATTCACGACGCCCGAGTCGAGGACGGCAATGTGGTCGTCCTGGCCGACGGC CGCCGGGTCGCCGAGGAAAG
Product: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
Products: NA
Alternate protein names: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; HHDD isomerase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; OPET decarboxylase [H]
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MRHARINFPGTAAPISGAVTPDGTGLDLGGRILPIPPGGFAPPVEGWIYGPLLNERSTWERFGDKLNADPYKAPPTVPVL YFKPRNTHLGHGGTVRLPATAARVELGASLGLVFGRQTARAAEAEALDNVTGLTIVLDLSVPNDSVYRPPVQEKCFDGAC PVGPWVVDKADLPADLSSLSIRTYVNGDKVAERRLDDLYRSPAKLVAEVTDFMALSAGDVLTLGYPVGAVPTAGRGDTVR VEIDGIGALDCTIAEESA
Sequences:
>Translated_258_residues MRHARINFPGTAAPISGAVTPDGTGLDLGGRILPIPPGGFAPPVEGWIYGPLLNERSTWERFGDKLNADPYKAPPTVPVL YFKPRNTHLGHGGTVRLPATAARVELGASLGLVFGRQTARAAEAEALDNVTGLTIVLDLSVPNDSVYRPPVQEKCFDGAC PVGPWVVDKADLPADLSSLSIRTYVNGDKVAERRLDDLYRSPAKLVAEVTDFMALSAGDVLTLGYPVGAVPTAGRGDTVR VEIDGIGALDCTIAEESA >Mature_258_residues MRHARINFPGTAAPISGAVTPDGTGLDLGGRILPIPPGGFAPPVEGWIYGPLLNERSTWERFGDKLNADPYKAPPTVPVL YFKPRNTHLGHGGTVRLPATAARVELGASLGLVFGRQTARAAEAEALDNVTGLTIVLDLSVPNDSVYRPPVQEKCFDGAC PVGPWVVDKADLPADLSSLSIRTYVNGDKVAERRLDDLYRSPAKLVAEVTDFMALSAGDVLTLGYPVGAVPTAGRGDTVR VEIDGIGALDCTIAEESA
Specific function: Decarboxylates OPET (5-oxo-pent-3-ene-1,2,5- tricarboxylic acid) into HHDD (2-hydroxy-hept-2,4-diene-1,7- dioate) and isomerizes it to OHED (2-oxo-hept-3-ene-1,7-dioate) [H]
COG id: COG0179
COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAH family [H]
Homologues:
Organism=Homo sapiens, GI156231349, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40786394, Length=184, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI66348062, Length=174, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI13654274, Length=177, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI215422413, Length=174, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787428, Length=178, Percent_Identity=25.8426966292135, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17557057, Length=173, Percent_Identity=26.5895953757225, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI24663695, Length=187, Percent_Identity=24.5989304812834, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28571789, Length=188, Percent_Identity=26.063829787234, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 - InterPro: IPR012684 - InterPro: IPR012686 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: =5.3.3.10; =4.1.1.68 [H]
Molecular weight: Translated: 27195; Mature: 27195
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHARINFPGTAAPISGAVTPDGTGLDLGGRILPIPPGGFAPPVEGWIYGPLLNERSTWE CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCHHHH RFGDKLNADPYKAPPTVPVLYFKPRNTHLGHGGTVRLPATAARVELGASLGLVFGRQTAR HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHEEECCCCEEEEECCCHHH AAEAEALDNVTGLTIVLDLSVPNDSVYRPPVQEKCFDGACPVGPWVVDKADLPADLSSLS HHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCEE IRTYVNGDKVAERRLDDLYRSPAKLVAEVTDFMALSAGDVLTLGYPVGAVPTAGRGDTVR EEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEE VEIDGIGALDCTIAEESA EEECCCCEEEEEECCCCC >Mature Secondary Structure MRHARINFPGTAAPISGAVTPDGTGLDLGGRILPIPPGGFAPPVEGWIYGPLLNERSTWE CCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCHHHH RFGDKLNADPYKAPPTVPVLYFKPRNTHLGHGGTVRLPATAARVELGASLGLVFGRQTAR HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHEEECCCCEEEEECCCHHH AAEAEALDNVTGLTIVLDLSVPNDSVYRPPVQEKCFDGACPVGPWVVDKADLPADLSSLS HHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCEE IRTYVNGDKVAERRLDDLYRSPAKLVAEVTDFMALSAGDVLTLGYPVGAVPTAGRGDTVR EEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEE VEIDGIGALDCTIAEESA EEECCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8550403 [H]