| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is hpaG [H]
Identifier: 83309905
GI number: 83309905
Start: 863964
End: 864728
Strand: Reverse
Name: hpaG [H]
Synonym: amb0806
Alternate gene names: 83309905
Gene position: 864728-863964 (Counterclockwise)
Preceding gene: 83309906
Following gene: 83309904
Centisome position: 17.41
GC content: 67.19
Gene sequence:
>765_bases ATGAAGCGCGCCCGAATCGCCTATAACGGCGCCATTCACGACGCCCGAGTCGAGGACGGCAATGTGGTCGTCCTGGCCGA CGGCCGCCGGGTCGCCGAGGAAAGCGTGGTGTGGCTGCCCCCCGTCGCCCCCGGCACCACCTTCGCCCTGGCCATCAACT ATGCCGACCACGCCAAGGAGCTGGCCTTCAAGGCGCCGGAGAAGCCGCTGGCCTTCCTCAAGGGGCCGGGCACCTTCGTC GGCCACCGTGCGGTGACGCGCAAGCCCGCCGACGCCGGCTTCATGCACTACGAGTGCGAGTTGGCGGTAGTGATCGGCCG CACCGCCCGCGACGTCAAGGCCAAGGACGCCTACGACTTCGTGGCGGGCTACACCGTGGCCAACGACTACGCCATCCGCA ACTTCCTGCAGAACTACTACCGCCCCAACCTGCGCACCAAGAACCGCGACGGCTGCACCGTTCTCGGGCCGTGGATGGTG GACCGCGACGACGTAGCCGATCCCATGAGCCTCGACATCTCCACCTTCGTCAACGGCGCCCGGGTCCAGTCCGGCAACAC GCGGGACATGGTGTTCGGGGTGCCCGCCCTGATCGAATACCTGTCGTCCTTCATGACCCTGTCGCCCGGCGACCTGATCC TCACCGGCACCCCCGACGGCATCGTCGACGTCAAGCCCGGCGACGAGGTGGTGACCGAGGTCGAGGGCGTCGGACGCCTG ACCAGTTTCATCGTCGACGACGAGACCTATTTCCAGCGGAGCTGA
Upstream 100 bases:
>100_bases ATCCGGTGGGCGCGGTGCCCACCGCCGGACGCGGCGACACGGTGCGGGTCGAGATCGACGGCATCGGCGCCCTGGACTGC ACCATCGCGGAGGAATCGGC
Downstream 100 bases:
>100_bases ACCCGATGATCAAGCACCTCATCAACGGCCGCCAGGTGGAGAGCGCCTCCACCATCGCCAATCTCAACCCCGCCAACAAC GAGGTGATCTGCCAGATCGC
Product: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
Products: NA
Alternate protein names: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; HHDD isomerase; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; OPET decarboxylase [H]
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MKRARIAYNGAIHDARVEDGNVVVLADGRRVAEESVVWLPPVAPGTTFALAINYADHAKELAFKAPEKPLAFLKGPGTFV GHRAVTRKPADAGFMHYECELAVVIGRTARDVKAKDAYDFVAGYTVANDYAIRNFLQNYYRPNLRTKNRDGCTVLGPWMV DRDDVADPMSLDISTFVNGARVQSGNTRDMVFGVPALIEYLSSFMTLSPGDLILTGTPDGIVDVKPGDEVVTEVEGVGRL TSFIVDDETYFQRS
Sequences:
>Translated_254_residues MKRARIAYNGAIHDARVEDGNVVVLADGRRVAEESVVWLPPVAPGTTFALAINYADHAKELAFKAPEKPLAFLKGPGTFV GHRAVTRKPADAGFMHYECELAVVIGRTARDVKAKDAYDFVAGYTVANDYAIRNFLQNYYRPNLRTKNRDGCTVLGPWMV DRDDVADPMSLDISTFVNGARVQSGNTRDMVFGVPALIEYLSSFMTLSPGDLILTGTPDGIVDVKPGDEVVTEVEGVGRL TSFIVDDETYFQRS >Mature_254_residues MKRARIAYNGAIHDARVEDGNVVVLADGRRVAEESVVWLPPVAPGTTFALAINYADHAKELAFKAPEKPLAFLKGPGTFV GHRAVTRKPADAGFMHYECELAVVIGRTARDVKAKDAYDFVAGYTVANDYAIRNFLQNYYRPNLRTKNRDGCTVLGPWMV DRDDVADPMSLDISTFVNGARVQSGNTRDMVFGVPALIEYLSSFMTLSPGDLILTGTPDGIVDVKPGDEVVTEVEGVGRL TSFIVDDETYFQRS
Specific function: Decarboxylates OPET (5-oxo-pent-3-ene-1,2,5- tricarboxylic acid) into HHDD (2-hydroxy-hept-2,4-diene-1,7- dioate) and isomerizes it to OHED (2-oxo-hept-3-ene-1,7-dioate) [H]
COG id: COG0179
COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FAH family [H]
Homologues:
Organism=Homo sapiens, GI156231349, Length=220, Percent_Identity=40.4545454545455, Blast_Score=146, Evalue=1e-35, Organism=Homo sapiens, GI40786394, Length=220, Percent_Identity=40.4545454545455, Blast_Score=145, Evalue=4e-35, Organism=Homo sapiens, GI215422413, Length=192, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI13654274, Length=200, Percent_Identity=33.5, Blast_Score=112, Evalue=2e-25, Organism=Homo sapiens, GI66348062, Length=187, Percent_Identity=33.6898395721925, Blast_Score=110, Evalue=1e-24, Organism=Escherichia coli, GI1787428, Length=187, Percent_Identity=35.8288770053476, Blast_Score=120, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17557057, Length=181, Percent_Identity=34.8066298342541, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6324161, Length=216, Percent_Identity=28.7037037037037, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI28572127, Length=226, Percent_Identity=35.8407079646018, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24663695, Length=216, Percent_Identity=34.2592592592593, Blast_Score=127, Evalue=5e-30, Organism=Drosophila melanogaster, GI28571789, Length=202, Percent_Identity=34.6534653465347, Blast_Score=102, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002529 - InterPro: IPR011234 - InterPro: IPR012684 - InterPro: IPR012686 [H]
Pfam domain/function: PF01557 FAA_hydrolase [H]
EC number: =5.3.3.10; =4.1.1.68 [H]
Molecular weight: Translated: 27839; Mature: 27839
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRARIAYNGAIHDARVEDGNVVVLADGRRVAEESVVWLPPVAPGTTFALAINYADHAKE CCCCEEEECCCEEECEECCCCEEEEECCCEECCCCEEEECCCCCCCEEEEEEECHHHHHH LAFKAPEKPLAFLKGPGTFVGHRAVTRKPADAGFMHYECELAVVIGRTARDVKAKDAYDF HHHCCCCCCEEEEECCCCEECCHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHH VAGYTVANDYAIRNFLQNYYRPNLRTKNRDGCTVLGPWMVDRDDVADPMSLDISTFVNGA HHCEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEHHHHCCCE RVQSGNTRDMVFGVPALIEYLSSFMTLSPGDLILTGTPDGIVDVKPGDEVVTEVEGVGRL EEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHH TSFIVDDETYFQRS HHEEECCHHHHCCC >Mature Secondary Structure MKRARIAYNGAIHDARVEDGNVVVLADGRRVAEESVVWLPPVAPGTTFALAINYADHAKE CCCCEEEECCCEEECEECCCCEEEEECCCEECCCCEEEECCCCCCCEEEEEEECHHHHHH LAFKAPEKPLAFLKGPGTFVGHRAVTRKPADAGFMHYECELAVVIGRTARDVKAKDAYDF HHHCCCCCCEEEEECCCCEECCHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHH VAGYTVANDYAIRNFLQNYYRPNLRTKNRDGCTVLGPWMVDRDDVADPMSLDISTFVNGA HHCEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEHHHHCCCE RVQSGNTRDMVFGVPALIEYLSSFMTLSPGDLILTGTPDGIVDVKPGDEVVTEVEGVGRL EEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHHH TSFIVDDETYFQRS HHEEECCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA