| Definition | Staphylococcus aureus RF122, complete genome. |
|---|---|
| Accession | NC_007622 |
| Length | 2,742,531 |
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The map label for this gene is flgJ [C]
Identifier: 82752225
GI number: 82752225
Start: 2667875
End: 2669734
Strand: Direct
Name: flgJ [C]
Synonym: SAB2519
Alternate gene names: 82752225
Gene position: 2667875-2669734 (Clockwise)
Preceding gene: 82752223
Following gene: 82752234
Centisome position: 97.28
GC content: 32.53
Gene sequence:
>1860_bases ATGCCTAAAAATAAAATTTTAATTTATTTGCTATCAACTACGCTCGTATTACCTACTTTAGTTTCACCTACCGCTTATGC TGATACACCTCAAAAAGATACTACAGCTAAGACAACATCTCATGATTCAAAAAAATCTAATGACGATGAAACTTCTAAGG ATACTACAAGTAAAGATATTGATAAAGCAGACAACAATAATACAAGTAACCAAGACAATAACGACAAAAAATTTAAAACT ATAGACGACAGCACTTCAGACTCTAACAATATCATTGATTTTATTTATAAGAATTTACCACAAACCAATATAAACCAATT GCTAACCAAAAATAAATACGATGATAATTACTCATTAACAACTTTAATCCAAAACTTATTCAATTTAAATTCGGATATTT CTGATTACGAACAACCTCGTAATGGTGAAAAGTCAACAAATGATTCGAATAAAAACAGTGCCAATAGCATCAAAAATGAC ACTGATACGCAATCATCTAAACAAGATAAAGCAGACAATCAAAAAGCACCTAAATCAAACAATACAAAACCAAGTACATC TAATAAGCAACCAAATTCGCCAAAGCCAACACAACCTAATCAATCAAATAGTCAACCAGCAAGTGACGATAAAGCAAATC AAAAATCTTCATCGAAAGATAATCAATCAATGTCAGATTCGGCTTTAGACTCTATTTTGGATCAATACAGTGAAGATGCA AAGAAAACACAAAAAGATTACGCATCTCAATCTAAAAAAGACAAAAATGAAAAATCTAATACAAAGAATCCACAGTTACC AACACAAGATGAATTGAAACATAAATCTAAACCTGCTCAATCATTCAATAACGATGTTAATCAAAAGGATACACGTGCAA CATCATTATTCGAAACAGATCCTAGTATATCTAACAATGATGATAGTGGACAATTTAACGTTGTTGACTCAAAAGATACA CGTCAATTTGTAAAATCAATTGCTAAAGATGCACATCGTATTGGTCAAGATAACGATATTTATGCATCTGTCATGATTGC CCAAGCAATCTTAGAATCTGACTCAGGTCGTAGTGCTTTAGCTAAGTCACCAAACCATAATTTATTCGGTATCAAAGGTG CTTTTGAAGAGAATTCTGTTCCTTTTAACACATTAGAAGCTGATGGTAATCAATTGTATAGTATTAATGCTGGATTCCGA AAATATCCAAGCACGAAAGAATCACTAAAAGATTACTCTGACCTTATTAAAAATGGTATTGATGGCAATCGAACAATTTA TAAACCAACATGGAAATCGGAAGCCGATTCTTATAAAGATGCAACATCACACTTATCTAAAACGTATGCTACAGATCCAA ACTATGCTAAGAAATTAAACAGTATTATTAAACACTATCAATTAACTCAGTTTGACGATGAACGCATGCCAGATTTAGAT AAATATGAACGTTCTATCAAGGATTATGATGATTCATCAGATGAATTCAAACCTTTCCGCGAGGTATCTGATAGTATGCC ATATCCACATGGCCAATGTACTTGGTACGTATATAACCGTATGAAACAATTTGGTACATCTATCTCAGGTGATTTAGGTG ATGCACATAATTGGAATAATCGAGCTCAATACCGTGATTATCAAGTAAGTTATACACCAAAACGTCATGCTGCTGTTGTA TTTGAGGCTGGACAATTTGGTGCAGATCAACATTACGGTCATGTAGCATTTGTAGAAAAAGTTAACAGTGATGGTTCTAT CGTTATTTCAGAATCCAATGTTAAAGGATTAGGTATCATTTCTCATAGAACTATCAACGCATCTGCCGCTGAAGAATTAT CATATATTACAGGTAAATAA
Upstream 100 bases:
>100_bases ATTGATACCTATCAACTATTTTCAGCATACGATAAATTATAACAAATCATAGTTTATTATCACACTTAATTATTATATTT TTCAAGGGAGAATACGAAAT
Downstream 100 bases:
>100_bases GTATTATATTAAACCCGTAAAATTTATAAGTATAAACAAGGAGTTCGGACTTAAACATATTTCTGTTCATAAGTCCGATT TCTTATTCAATTAAACCCGA
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: 1,4-beta-N-acetylmuramoylhydrolase; Lysozyme; Peptidoglycan hydrolase; Pg-hydrolase 2 [H]
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKT IDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKND TDTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDT RQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFR KYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVV FEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK
Sequences:
>Translated_619_residues MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKT IDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKND TDTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDT RQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFR KYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVV FEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK >Mature_618_residues PKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDIDKADNNNTSNQDNNDKKFKTI DDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDT DTQSSKQDKADNQKAPKSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDAK KTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNDDSGQFNVVDSKDTR QFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRK YPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLDK YERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNNRAQYRDYQVSYTPKRHAAVVF EAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINASAAEELSYITGK
Specific function: May work in concert with and potentiate the processive hydrolytic action of muramidase-1, which requires binding of the enzyme to non-reducing ends of glycan chains. Hydrolysis in the midst of glycan chains would increase the number of binding sites for m
COG id: COG1705
COG function: function code NU; Muramidase (flagellum-specific)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 6 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1787321, Length=152, Percent_Identity=28.2894736842105, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013338 - InterPro: IPR002901 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01832 Glucosaminidase; PF01476 LysM [H]
EC number: =3.2.1.17 [H]
Molecular weight: Translated: 69310; Mature: 69178
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS50911 CHAP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDI CCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DKADNNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHH TLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDTDTQSSKQDKADNQKAPKSN HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCC NTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETD HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHEECC PSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSAL CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH AKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRKYPSTKESLKDYSDLIKNGI HCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHCCC DGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNN HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC RAQYRDYQVSYTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGII CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEE SHRTINASAAEELSYITGK EECCCCHHHHHHHHHHCCC >Mature Secondary Structure PKNKILIYLLSTTLVLPTLVSPTAYADTPQKDTTAKTTSHDSKKSNDDETSKDTTSKDI CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH DKADNNNTSNQDNNDKKFKTIDDSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLT HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHH TLIQNLFNLNSDISDYEQPRNGEKSTNDSNKNSANSIKNDTDTQSSKQDKADNQKAPKSN HHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCC NTKPSTSNKQPNSPKPTQPNQSNSQPASDDKANQKSSSKDNQSMSDSALDSILDQYSEDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH KKTQKDYASQSKKDKNEKSNTKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETD HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHEECC PSISNNDDSGQFNVVDSKDTRQFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSAL CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH AKSPNHNLFGIKGAFEENSVPFNTLEADGNQLYSINAGFRKYPSTKESLKDYSDLIKNGI HCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHCCC DGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDERMPDLD CCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH KYERSIKDYDDSSDEFKPFREVSDSMPYPHGQCTWYVYNRMKQFGTSISGDLGDAHNWNN HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCC RAQYRDYQVSYTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGII CCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCEEEEE SHRTINASAAEELSYITGK EECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1347040; 2753858 [H]