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The map label for this gene is deoC2

Identifier: 82751738

GI number: 82751738

Start: 2153073

End: 2153735

Strand: Reverse

Name: deoC2

Synonym: SAB2021c

Alternate gene names: 82751738

Gene position: 2153735-2153073 (Counterclockwise)

Preceding gene: 82751740

Following gene: 82751737

Centisome position: 78.53

GC content: 40.42

Gene sequence:

>663_bases
ATGAATAGTGCAAAATTGATTGATCACACTTTACTGAAGCCTGAGTCAACACGTACGCAAATCGATCAAATCATCGATGA
AGCGAAAGCATACAATTTTAAATCTGTATGTGTGAATCCAACGCATGTTAAATATGCAGCAGAGCGACTAGATGATTCAG
GTGTGCTAGTTTGTACGGTAATAGGGTTCCCATTAGGTGCGTCGACAACTGCAACGAAAGCATTTGAAACAGAAGATGCA
ATTCAAAATGGTGCAGATGAAATTGACATGGTCATCAACATCGGCGCATTAAAAGATGGACGTTTTGATGATGTACAACA
AGACATTGAAGCAGTGGTTAAAGCTGCGAAAGGTCACACAGTAAAAGTGATTATTGAGACGGTATTGTTGAACCATGACG
AAATCGTAAAAGCGAGTGAATTAACAAAAGCGGCTGGTGCGGACTTCGTTAAAACTTCAACAGGTTTTGCAGGTGGCGGT
GCGACTGCAGAAGACGTTAAATTAATGAAAGATACAGTAGGTGCTGATGTAGAAGTAAAAGCATCAGGTGGCGTACGTAA
TTTAGAAGATTTCAATAAAATGGTTGAAGCAGGTGCGACACGTATTGGTGCGAGCGCAGGTGTTCAAATTATGCAAGGTT
TAGAAGCAGATTCAGATTACTAA

Upstream 100 bases:

>100_bases
TAAAGGCGGACATCTAACCTGATATTTAAATGAACCTGACGCTCAATCAACTAATTTACAACCGTATTTTTATAATCAAC
CATAAAGGAGGAGATAGAAA

Downstream 100 bases:

>100_bases
TTTTATAAAAAATATCTAAGCATGGGACATCGTAACCATATATAAGTATGTCGATATCAACTTTAAGACATCATAAATGC
CATGATGATTCTAAGATAAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 1; DERA 1; Deoxyriboaldolase 1 [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLDDSGVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLNHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Sequences:

>Translated_220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLDDSGVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLNHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
>Mature_220_residues
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLDDSGVLVCTVIGFPLGASTTATKAFETEDA
IQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTVKVIIETVLLNHDEIVKASELTKAAGADFVKTSTGFAGGG
ATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=217, Percent_Identity=29.4930875576037, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1790841, Length=210, Percent_Identity=34.2857142857143, Blast_Score=82, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17533015, Length=168, Percent_Identity=30.3571428571429, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23261; Mature: 23261

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLDDSGVLVCTV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHCCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETVLLNHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNSAKLIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLDDSGVLVCTV
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHCCCCCEEEEEE
IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
VKVIIETVLLNHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA