Click here to switch to the map view.

The map label for this gene is ymcA [H]

Identifier: 82750893

GI number: 82750893

Start: 1255116

End: 1255481

Strand: Direct

Name: ymcA [H]

Synonym: SAB1155

Alternate gene names: 82750893

Gene position: 1255116-1255481 (Clockwise)

Preceding gene: 82750892

Following gene: 82750894

Centisome position: 45.76

GC content: 29.51

Gene sequence:

>366_bases
ATGTATAATAAAGATGACGTGTTGAAACAAGCGGATAATATTGCAAATAAAATTAAAAATTTGGATACTATCAAAACATA
TCAACAAATTGAAGCACAGATTCATCAGAACCAAACGATAAAGACTAAAATGGATATGTTAAAAAAGCATCAAAAACAAG
CAGTAAACTTTCAAAATTACGGGAAACAAAATGCGCTAGAACAGTCGGAACATACCATTCAAAGTATAGAAGCAGAAATA
AATACATTGCCCATAGTTGAACAGTTTCAAACTTCACAATATGAAGCGAATCAATTATTGAAAATGTTTGTATCAACAAT
GGAAACACGTTTAAATGACCATAATAAAGCCAAACATAGTGATTAA

Upstream 100 bases:

>100_bases
GATTGGTAAACTAGTGGAAGTACGAATAGATGAAGCTAAACAGTATTCATTAAATGGCAGTTTTGTAAAGGAAGAAGAGC
CGGAAATGGTGATTCAATAA

Downstream 100 bases:

>100_bases
TTACAAACAAAAAGGAGAACAATCATATGAAATCAAGAAAACTGGCTATAACTGCACTTTTAATTGCAATAAATGTTGTA
TTAAGCAGTATTATCATCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEI
NTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD

Sequences:

>Translated_121_residues
MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEI
NTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD
>Mature_121_residues
MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNYGKQNALEQSEHTIQSIEAEI
NTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHSD

Specific function: May work together with ylbF to regulate community development [H]

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016783
- InterPro:   IPR010368 [H]

Pfam domain/function: PF06133 DUF964 [H]

EC number: NA

Molecular weight: Translated: 14164; Mature: 14164

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHC
GKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHS
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
D
C
>Mature Secondary Structure
MYNKDDVLKQADNIANKIKNLDTIKTYQQIEAQIHQNQTIKTKMDMLKKHQKQAVNFQNY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHC
GKQNALEQSEHTIQSIEAEINTLPIVEQFQTSQYEANQLLKMFVSTMETRLNDHNKAKHS
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]