Click here to switch to the map view.

The map label for this gene is xtmA [H]

Identifier: 82750120

GI number: 82750120

Start: 399026

End: 399595

Strand: Direct

Name: xtmA [H]

Synonym: SAB0359

Alternate gene names: 82750120

Gene position: 399026-399595 (Clockwise)

Preceding gene: 82750119

Following gene: 82750122

Centisome position: 14.55

GC content: 36.67

Gene sequence:

>570_bases
ATGAGTGAGTTAACGGCAAAACAAGCGCGTTTTGTGAATGAGTATATTAGAACACTTAATGTTACACAAAGTGCTATAAA
AGCGGGCTATAGTGCAAATAGCGCACATGTGACAGGGTGTAGGTTATTGAAGAAACCGCATATTAAGCAATATATACAAG
AACAAAAAGATAAGATTATAGATGAGAATGTATTAACTGCAAAAGAGTTACTACATGTACTTACCAATGCGGCAGTCGGT
GATGAAACAGAAACGAAAGAAGTTGTAGTCAAGCGTGGGGAATATAAAGAGAATCCACAAAATGGCAAAGTACAGTTAGT
CTATAATGAACATGTTGAACTGATAGAGGTGCCAATTAAGCCAAGTGATCGTTTAAAAGCTCGTGATATGTTGGGTAAAT
ACCATAAGTTATTTACAGATAAGCATGATATTAACGGGAATGTGCCTATGTTCATTAATATTGGTGAATGGGACGGAGAC
GATGAGGAGTTAGATAAGGCAGTGAAAGATGTATCTAACGCTAATCCTAATCATACTGTGATTGTGGATGATATTCCGTT
AGAGGATTGA

Upstream 100 bases:

>100_bases
GACGTAGTTATCAAGATATTAGTGGTGTCTTAGATTGTTCAGAACAATCTGTAAGATTTTGGTATGAAACCTTATTAGAT
AAAATTGTAGAGGTGATAGA

Downstream 100 bases:

>100_bases
TTACAGTAAAAACGATTATCATATTGAGTTAGTGAGGATTAGTTTACTAATTCACCCTAGCTTTATATTAAAGCGTTATA
AAGATAAAAGGGAGAACACT

Product: pathogenicity island protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVG
DETETKEVVVKRGEYKENPQNGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPMFINIGEWDGD
DEELDKAVKDVSNANPNHTVIVDDIPLED

Sequences:

>Translated_189_residues
MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVG
DETETKEVVVKRGEYKENPQNGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPMFINIGEWDGD
DEELDKAVKDVSNANPNHTVIVDDIPLED
>Mature_188_residues
SELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNAAVGD
ETETKEVVVKRGEYKENPQNGKVQLVYNEHVELIEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPMFINIGEWDGDD
EELDKAVKDVSNANPNHTVIVDDIPLED

Specific function: Functions as a terminase [H]

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaS and B.subtilis phage SPP1 terminase small subunit [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018925
- InterPro:   IPR005335 [H]

Pfam domain/function: PF10668 Phage_terminase; PF03592 Terminase_2 [H]

EC number: NA

Molecular weight: Translated: 21402; Mature: 21271

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKII
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQNGKVQLVYNEHVELIEVPIK
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEECCC
PSDRLKARDMLGKYHKLFTDKHDINGNVPMFINIGEWDGDDEELDKAVKDVSNANPNHTV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEE
IVDDIPLED
EEECCCCCC
>Mature Secondary Structure 
SELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKII
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQNGKVQLVYNEHVELIEVPIK
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEECCC
PSDRLKARDMLGKYHKLFTDKHDINGNVPMFINIGEWDGDDEELDKAVKDVSNANPNHTV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEE
IVDDIPLED
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]