Click here to switch to the map view.

The map label for this gene is ycjS [H]

Identifier: 82749926

GI number: 82749926

Start: 194555

End: 195595

Strand: Direct

Name: ycjS [H]

Synonym: SAB0157

Alternate gene names: 82749926

Gene position: 194555-195595 (Clockwise)

Preceding gene: 82749925

Following gene: 82749927

Centisome position: 7.09

GC content: 39.77

Gene sequence:

>1041_bases
ATGACAAAATTAAAAGTTGGTGTGATAGGTGTTGGTGGTATTGCACAAGACCGTCATATTCCAGCATTGCTGAAACTCAA
AGACACAGTCGCATTAGTTGCAGTACAAGATATTAATACAGTGCAGATGATTGATGTTGCGAAGCGCTTTAATATACCTC
ATGCAGTTGAGACACCTAGCGAGCTGTTTAAACTTGTTGATGCGGTGGTCATTTGTACACCTAATAAATTCCATGCTAAT
CTTTCTATAGAAGCATTGAATCATGGCGTCCATGTATTGTGTGAAAAGCCAATGGCGATGACGACGGAAGAGTGTGACCG
CATGATTGAAGCGGCTAATAAAAATTGTAAATTACTAACTGTCGCTTATCATTATCGCCATACGGATGTCGCTATGACTG
CTAAAAAAGCAATTGAATCAGGTGTTGTTGGTAAACCTTTAGTAGCACGTGTACAAGCGATGCGTAGGCGTAAAGTGCCT
GGCTGGGGCGTTTTTACCAATAAAGCGTTGCAAGGTGGCGGTAGTTTAATCGATTATGGTTGCCACTTGTTAGACTTATC
TTTGTGGTTACTAGGTAAAAATATGGTGCCGCATGAAGTGCTAGGAAAAACATATAATCAATTGAGCAAACAACCGAATC
AAATTAATGATTGGGGAACATTTGATCACACTAAATTTGATGTCGATGATCATGTTACTAGTTATATGACATTTGCCAAT
CGAGCAAGCATGCAGTTTGAATGTTCGTGGTCTGCAAATATAAAGGAAGATAAGGTACACGTTAGTTTATCAGGCGAAGA
TGGCGGTATCAATTTATTTCCATTTGAAATATATGAGCCCCGCTTTGGAACTATTTTTGAAAGCAAAGCTAATGTTGAGC
ATAACGAAGACATTGCTGGTGAGAGGCAGGCGCGTAACTTTGTTCATGCGTGTTTAGGGATAGAAGAGATTGTGGTGAAA
CCGGAAGAAGCACGCAATGTAAATGCCCTTATAGAAGCGATTTATCGTAGCGATCTTGATAACAAGAGCATACAACTTTA
A

Upstream 100 bases:

>100_bases
AGCAATGGTAGTTACAAAAATTCTTGAAGCGATTTATCAGTCTGCAAAATCAGGCAAAGCAATTTACTTTGAATAACATC
ATACGGTAAGGAGGCACATC

Downstream 100 bases:

>100_bases
TGATTATTATATATAATACAAAATTCTCAATATAAAAAGAAGGAGTGCTTTTCAATGAAAATAGGTGTATTTTCAGTATT
ATTTTACGATAAAAATTTTG

Product: NADH-dependent dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MTKLKVGVIGVGGIAQDRHIPALLKLKDTVALVAVQDINTVQMIDVAKRFNIPHAVETPSELFKLVDAVVICTPNKFHAN
LSIEALNHGVHVLCEKPMAMTTEECDRMIEAANKNCKLLTVAYHYRHTDVAMTAKKAIESGVVGKPLVARVQAMRRRKVP
GWGVFTNKALQGGGSLIDYGCHLLDLSLWLLGKNMVPHEVLGKTYNQLSKQPNQINDWGTFDHTKFDVDDHVTSYMTFAN
RASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFEIYEPRFGTIFESKANVEHNEDIAGERQARNFVHACLGIEEIVVK
PEEARNVNALIEAIYRSDLDNKSIQL

Sequences:

>Translated_346_residues
MTKLKVGVIGVGGIAQDRHIPALLKLKDTVALVAVQDINTVQMIDVAKRFNIPHAVETPSELFKLVDAVVICTPNKFHAN
LSIEALNHGVHVLCEKPMAMTTEECDRMIEAANKNCKLLTVAYHYRHTDVAMTAKKAIESGVVGKPLVARVQAMRRRKVP
GWGVFTNKALQGGGSLIDYGCHLLDLSLWLLGKNMVPHEVLGKTYNQLSKQPNQINDWGTFDHTKFDVDDHVTSYMTFAN
RASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFEIYEPRFGTIFESKANVEHNEDIAGERQARNFVHACLGIEEIVVK
PEEARNVNALIEAIYRSDLDNKSIQL
>Mature_345_residues
TKLKVGVIGVGGIAQDRHIPALLKLKDTVALVAVQDINTVQMIDVAKRFNIPHAVETPSELFKLVDAVVICTPNKFHANL
SIEALNHGVHVLCEKPMAMTTEECDRMIEAANKNCKLLTVAYHYRHTDVAMTAKKAIESGVVGKPLVARVQAMRRRKVPG
WGVFTNKALQGGGSLIDYGCHLLDLSLWLLGKNMVPHEVLGKTYNQLSKQPNQINDWGTFDHTKFDVDDHVTSYMTFANR
ASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFEIYEPRFGTIFESKANVEHNEDIAGERQARNFVHACLGIEEIVVKP
EEARNVNALIEAIYRSDLDNKSIQL

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=348, Percent_Identity=31.6091954022989, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787307, Length=192, Percent_Identity=26.5625, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6323975, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581117, Length=281, Percent_Identity=26.6903914590747, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38547; Mature: 38416

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLKVGVIGVGGIAQDRHIPALLKLKDTVALVAVQDINTVQMIDVAKRFNIPHAVETPS
CCEEEEEEEEECCCCCCCCCCHHEEECCEEEEEEECCCCEEHHHHHHHHCCCCCCCCCHH
ELFKLVDAVVICTPNKFHANLSIEALNHGVHVLCEKPMAMTTEECDRMIEAANKNCKLLT
HHHHHHHEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEE
VAYHYRHTDVAMTAKKAIESGVVGKPLVARVQAMRRRKVPGWGVFTNKALQGGGSLIDYG
EEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHCCCCCHHHHH
CHLLDLSLWLLGKNMVPHEVLGKTYNQLSKQPNQINDWGTFDHTKFDVDDHVTSYMTFAN
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC
RASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFEIYEPRFGTIFESKANVEHNEDIAG
CCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCC
ERQARNFVHACLGIEEIVVKPEEARNVNALIEAIYRSDLDNKSIQL
HHHHHHHHHHHHCHHHHEECCHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TKLKVGVIGVGGIAQDRHIPALLKLKDTVALVAVQDINTVQMIDVAKRFNIPHAVETPS
CEEEEEEEEECCCCCCCCCCHHEEECCEEEEEEECCCCEEHHHHHHHHCCCCCCCCCHH
ELFKLVDAVVICTPNKFHANLSIEALNHGVHVLCEKPMAMTTEECDRMIEAANKNCKLLT
HHHHHHHEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEE
VAYHYRHTDVAMTAKKAIESGVVGKPLVARVQAMRRRKVPGWGVFTNKALQGGGSLIDYG
EEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHCCCCCHHHHH
CHLLDLSLWLLGKNMVPHEVLGKTYNQLSKQPNQINDWGTFDHTKFDVDDHVTSYMTFAN
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC
RASMQFECSWSANIKEDKVHVSLSGEDGGINLFPFEIYEPRFGTIFESKANVEHNEDIAG
CCCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCC
ERQARNFVHACLGIEEIVVKPEEARNVNALIEAIYRSDLDNKSIQL
HHHHHHHHHHHHCHHHHEECCHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]