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The map label for this gene is ycjS [H]

Identifier: 82749925

GI number: 82749925

Start: 193451

End: 194530

Strand: Direct

Name: ycjS [H]

Synonym: SAB0156

Alternate gene names: 82749925

Gene position: 193451-194530 (Clockwise)

Preceding gene: 82749924

Following gene: 82749926

Centisome position: 7.05

GC content: 38.98

Gene sequence:

>1080_bases
ATGATGACGATTAAAGTTGGAATCATTGGGTGTGGTGGTATTGCGAATGGCAAGCACATGCCAAGTTTACAAAAAGTTGA
AAATGTTGAAATGACCGCATTTTGTGACGTAGACATTTCGAAAGCAGCGTGTGCGGCAAAAGCATACGGTACTGACAATG
CAAAGGTTTATGATGATTACAAAGCATTGTTAAAAGATGACACGATTGATGTTATCCATGTTTGTACGCCAAATGACTCG
CATTGTGAAATTACTGTAGCAGGGTTGCATGCCGGTAAACATGTGATGTGTGAAAAACCAATGGCTAAAACGACAGCAGA
AGCTCAAAAAATGATAGATACAGCTAAATCAACAGGTAAAAAATTAACAATAGGTTATCAAAACCGCTTCAGACCAGATA
GTCAATTTTTATATAAATCAGCGCAACGTGGCGACTTAGGTGACATTTATTTCGGAAAGGCACATGCTATTCGTCGTCGA
GCAGTACCAACATGGGGTGTCTTTCTAGACGAAGAAGCTCAAGGTGGAGGACCATTAATCGATATCGGTACACACGCTTT
AGATTTAACGTTATGGATGATGGATAATTATGAACCAGAATCAGTGATGGGTTCAACATTCCATAAATTAAATAAACAGC
ATGATGCGGCAAACGCTTGGGGTTCATGGAATCCAGATGAATTTACAGTTGAAGACTCTGCGTTTGGCTTTATTAAAATG
AAGAACGGAGCGACGATCATTTTAGAATCCGCTTGGGCGATTAATTCTTTAGAAGTGGATGAGGCAAAATGTTCATTATC
AGGAACGAAAGCAGGTGCTGATATGAAAGATGGTCTACGTATTCATGGTGAAGATATGGGCACACTTTATACCAAACACG
TTGAATTGGAAAACAAAGGCGTCGACTTTTATGAAGGTAATGAAGTGGATGAAGCTGAAGAAGAAGCAAAAGCTTGGATT
GATGCAGTTGTAAATGATACTGAACCAGTTGTGAAACCGGAACAAGCAATGGTAGTTACAAAAATTCTTGAAGCGATTTA
TCAGTCTGCAAAATCAGGCAAAGCAATTTACTTTGAATAA

Upstream 100 bases:

>100_bases
TGGGGCCCCGCCAATATAACATTGTACAGCCTAGAACGTTGATTGATGTTTAAGGCTCGACATACGCACTAATGACGATA
AAGATTTAAAGGAGGACGTT

Downstream 100 bases:

>100_bases
CATCATACGGTAAGGAGGCACATCATGACAAAATTAAAAGTTGGTGTGATAGGTGTTGGTGGTATTGCACAAGACCGTCA
TATTCCAGCATTGCTGAAAC

Product: NADH-dependent dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MMTIKVGIIGCGGIANGKHMPSLQKVENVEMTAFCDVDISKAACAAKAYGTDNAKVYDDYKALLKDDTIDVIHVCTPNDS
HCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGKKLTIGYQNRFRPDSQFLYKSAQRGDLGDIYFGKAHAIRRR
AVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKM
KNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKGVDFYEGNEVDEAEEEAKAWI
DAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE

Sequences:

>Translated_359_residues
MMTIKVGIIGCGGIANGKHMPSLQKVENVEMTAFCDVDISKAACAAKAYGTDNAKVYDDYKALLKDDTIDVIHVCTPNDS
HCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGKKLTIGYQNRFRPDSQFLYKSAQRGDLGDIYFGKAHAIRRR
AVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKM
KNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKGVDFYEGNEVDEAEEEAKAWI
DAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE
>Mature_359_residues
MMTIKVGIIGCGGIANGKHMPSLQKVENVEMTAFCDVDISKAACAAKAYGTDNAKVYDDYKALLKDDTIDVIHVCTPNDS
HCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGKKLTIGYQNRFRPDSQFLYKSAQRGDLGDIYFGKAHAIRRR
AVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKM
KNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKGVDFYEGNEVDEAEEEAKAWI
DAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=208, Percent_Identity=30.2884615384615, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI1787574, Length=357, Percent_Identity=36.6946778711485, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI87081947, Length=185, Percent_Identity=29.1891891891892, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789848, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323975, Length=119, Percent_Identity=31.9327731092437, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581117, Length=172, Percent_Identity=25.5813953488372, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 39361; Mature: 39361

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTIKVGIIGCGGIANGKHMPSLQKVENVEMTAFCDVDISKAACAAKAYGTDNAKVYDDY
CEEEEEEEEEECCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCEEHHHH
KALLKDDTIDVIHVCTPNDSHCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGK
HHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
KLTIGYQNRFRPDSQFLYKSAQRGDLGDIYFGKAHAIRRRAVPTWGVFLDEEAQGGGPLI
EEEEECCCCCCCCHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCCEEEECCCCCCCCEE
DIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKM
EECCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEE
KNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKG
CCCCEEEEECCCCCCCEECCCHHEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCC
VDFYEGNEVDEAEEEAKAWIDAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MMTIKVGIIGCGGIANGKHMPSLQKVENVEMTAFCDVDISKAACAAKAYGTDNAKVYDDY
CEEEEEEEEEECCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCEEHHHH
KALLKDDTIDVIHVCTPNDSHCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGK
HHHHCCCCEEEEEEECCCCCCEEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
KLTIGYQNRFRPDSQFLYKSAQRGDLGDIYFGKAHAIRRRAVPTWGVFLDEEAQGGGPLI
EEEEECCCCCCCCHHHHHHHCCCCCCCCEEECHHHHHHHHCCCCCCEEEECCCCCCCCEE
DIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKM
EECCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEEEE
KNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKG
CCCCEEEEECCCCCCCEECCCHHEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCC
VDFYEGNEVDEAEEEAKAWIDAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]