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The map label for this gene is araC [C]

Identifier: 82749817

GI number: 82749817

Start: 51063

End: 53300

Strand: Direct

Name: araC [C]

Synonym: SAB0041

Alternate gene names: 82749817

Gene position: 51063-53300 (Clockwise)

Preceding gene: 82749816

Following gene: 82749818

Centisome position: 1.86

GC content: 33.07

Gene sequence:

>2238_bases
ATGCAACGTGATTATTTAATTCGAGTAGAAACTGAAAGTATGTCAGATTTCAAAAGGCTCAATGGTTTAATGATTGGTTT
TGTTATTAAAGGTGAGGCGCACATTTATGATGAAAATAATATGACGCAATGCAACAGTGGCGACATTTTCATCATTAACC
ACCGCGATTTGTATCGATTTCAACTTCAACAAGATGGCATCATATGTTATATCCAATTCCAAATGAAATATTTAGCAGAC
AAGTTTGATGATGTGCATTGTCTATATTTTCACTTAACAGATGCGACCACATCAAAAAATATACATCAACTGAGAAATAT
AATGGCAAGACTGGTTTCAACACACATTCGACATAATGAGTTGTCTAAATTGACTGAGCAACAACTTGTCATTCAGTTGC
TTATGCATATGATTCATTATGTTCCGCGTACATATCATTCGAACCAAAGTATCTTAAATGATGATAAAGTGAATCAAGTA
TGCGACTATATCGAGTTACATTTTCATGAAGACTTAAGCCTTTCGGAATTAAGCGAATATGTTGGGTGGTCAGAGAGCCA
TCTGTCTAAAAAGTTTGCAGAATCGCTAGGTGTAGGATTCCAGCATTTCTTAAATACGACGCGAATTGAACATGCGAAAC
TCGATTTGACATACACAGATGAAACGATTACTGATATTGCATTGCAAAATGGCTTTTCAAGTGCAGCGAGCTTTGCGAGA
ACATTTAAACACTTTACGCATCAAACACCTAAACAATATCGAGGTGATCGTCCAGCAATCACTGAAAATCAACAATCGGC
ACAACATAATTATCACGACCGTGAATTGATATTACTTTTAAATGACTACATTGAAGAAATGAATCATTTCATTGAAGATA
TTGAAAAGGTGAACTATAAAGAGATTACCTTTCAACCAACCAATCACCAACTAAATCAATTTAATCATATTATTCAAGTG
GGCTATTTGAGGAATTTACTCAATACACAGTATCAATCACAGTTACTTACATGTCATCATGATTTTTATGTCAATGAAGT
ATTAGCATATGATGTGATGCCATATATTATGAAAAAGCTCAATGCGCCATTCACGTATGATGCAGAAATTTCGAATATAT
TTTATGATATCGATTTGTGTTTAGACTTTTTATTAGATCATAACTTTAGTTTGACCATGCATTTGGATCAGTATGACTCA
CGTGATTATATCGATGCATTTAAAATTTTTATCCATCACGTTGCGCTGCATGTCAGTCATAGAAAAGATTTGAAGTTCAA
CTTGCATTTGACGACATTGCACACGTCTTTGATTGAAATGATTGATTATTTTAAAGCATTATTCCCTAATGGTGGCTTGT
ACATTCACTTAGATCAAGCTACGGAAAGACATCTACCATTGCTGAAACGACTTGAGCCACACATCGACCATTTTGTATTT
GATGCCAATTCAAATGATGCTGTTGATTTTAATAAAATGAATGATGATGAATTTAAAACCTCAAGTCAAATGATTATTAA
TAAAACGAATTACCTTATCGATTTAATGCATCGTCATCACCTAAAGCGTCCACTCATTTTACTCAATTGGAATACATTGA
CGGGCGATACATTTATTACAAACGGCGAATATTTTAGAGGTGGTATCATCATTGAGCAATTATTAAAATTAAGTTCTAAA
GTAGAGGGTATCGGTTATTGGTTGAACTATGATTTGCACGTCAGTCATTGTAAAAATGAACGGGATTATATGAATTCTAT
TGAACTGTTTCATCAATATAATGGAAAACGTCCGGTCTATTTCACGGCATTGTTATTTAATAAATTAACAAGCAATATTT
TATATTCTGATGATACATGTATTGTCACGGGAACTGATTCAAATTTTCAAATATTGTTATATGATGCAAAGCATTTTAAT
CCGTACTTAGCGTTGGACAATCAAATGAATATGCGTGCGACGGAAATGATTCATTTGAACATAAATGCCCTAGAAGAAGG
TATGTATAAGATTAAACATTTTACCTTAGATAAAGAAAATGGTGCATTATTTAATCTTTGGCGCAAACATCATACGATAC
ATGGTATGGACAAGGATTCTATAGATTACGTTAATCGAATGAGTTTTCCAAAATTAGAAGTGTACGATATAGATATGACG
GATACGCTGGCATTAAATATTAAAATGATTACAAATGGAATTCACTTAATTGAAGTAAAACGTTACCCAAGTTCATAA

Upstream 100 bases:

>100_bases
CGAGTGAGGATAAATAATCATCCACACACACGATTCAATATGAAATTCAAATATGTTGCTGTAAAATAAACGTATTCATA
TTACTGAATTGAGGGATAGT

Downstream 100 bases:

>100_bases
AATGATAACAAATCACAATTTATGTTATACATAATTTGTGATTTTTTGTATTCAAAGTTAAAATTGCAAAAAATTAATGG
TTAACATCTCTGTTGTTGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 745; Mature: 745

Protein sequence:

>745_residues
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLAD
KFDDVHCLYFHLTDATTSKNIHQLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQV
CDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFAR
TFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKVNYKEITFQPTNHQLNQFNHIIQV
GYLRNLLNTQYQSQLLTCHHDFYVNEVLAYDVMPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLDQYDS
RDYIDAFKIFIHHVALHVSHRKDLKFNLHLTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHIDHFVF
DANSNDAVDFNKMNDDEFKTSSQMIINKTNYLIDLMHRHHLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSSK
VEGIGYWLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFN
PYLALDNQMNMRATEMIHLNINALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDMT
DTLALNIKMITNGIHLIEVKRYPSS

Sequences:

>Translated_745_residues
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLAD
KFDDVHCLYFHLTDATTSKNIHQLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQV
CDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFAR
TFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKVNYKEITFQPTNHQLNQFNHIIQV
GYLRNLLNTQYQSQLLTCHHDFYVNEVLAYDVMPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLDQYDS
RDYIDAFKIFIHHVALHVSHRKDLKFNLHLTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHIDHFVF
DANSNDAVDFNKMNDDEFKTSSQMIINKTNYLIDLMHRHHLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSSK
VEGIGYWLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFN
PYLALDNQMNMRATEMIHLNINALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDMT
DTLALNIKMITNGIHLIEVKRYPSS
>Mature_745_residues
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRFQLQQDGIICYIQFQMKYLAD
KFDDVHCLYFHLTDATTSKNIHQLRNIMARLVSTHIRHNELSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQV
CDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFAR
TFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKVNYKEITFQPTNHQLNQFNHIIQV
GYLRNLLNTQYQSQLLTCHHDFYVNEVLAYDVMPYIMKKLNAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLDQYDS
RDYIDAFKIFIHHVALHVSHRKDLKFNLHLTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHIDHFVF
DANSNDAVDFNKMNDDEFKTSSQMIINKTNYLIDLMHRHHLKRPLILLNWNTLTGDTFITNGEYFRGGIIIEQLLKLSSK
VEGIGYWLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVYFTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFN
PYLALDNQMNMRATEMIHLNINALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDMT
DTLALNIKMITNGIHLIEVKRYPSS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG3664

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=242, Percent_Identity=21.0743801652893, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 87928; Mature: 87928

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRF
CCCCEEEEEECCCHHHHHHHCCEEEEEEEECCEEEECCCCCCCCCCCCEEEEECCCEEEE
QLQQDGIICYIQFQMKYLADKFDDVHCLYFHLTDATTSKNIHQLRNIMARLVSTHIRHNE
EEECCCEEEEEEEEHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQVCDYIELHFHEDLSLSELSEY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHHHHHHH
VGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFAR
CCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEECCCHHHHHHHHCCHHHHHHHHH
TFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKVNYK
HHHHHHCCCCHHHCCCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCE
EITFQPTNHQLNQFNHIIQVGYLRNLLNTQYQSQLLTCHHDFYVNEVLAYDVMPYIMKKL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLDQYDSRDYIDAFKIFIHHVALHVSH
CCCEEECCCHHHHEEEHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
RKDLKFNLHLTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHIDHFVF
CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEE
DANSNDAVDFNKMNDDEFKTSSQMIINKTNYLIDLMHRHHLKRPLILLNWNTLTGDTFIT
ECCCCCCEECCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCEECCCEEEE
NGEYFRGGIIIEQLLKLSSKVEGIGYWLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVY
CCCEEECHHHHHHHHHHHHCCCCEEEEEEEEEEEHHCCCHHHHHHHHHHHHHCCCCCCEE
FTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFNPYLALDNQMNMRATEMIHLN
EHHHHHHHHHHCCEECCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCEEEEEEEEE
INALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDMT
HHHHHHHHHHHHEEEEECCCCHHHHHHHHCCEECCCCCCHHHHHHHCCCCCEEEEECCCC
DTLALNIKMITNGIHLIEVKRYPSS
CEEEEEEEEEECCEEEEEEECCCCC
>Mature Secondary Structure
MQRDYLIRVETESMSDFKRLNGLMIGFVIKGEAHIYDENNMTQCNSGDIFIINHRDLYRF
CCCCEEEEEECCCHHHHHHHCCEEEEEEEECCEEEECCCCCCCCCCCCEEEEECCCEEEE
QLQQDGIICYIQFQMKYLADKFDDVHCLYFHLTDATTSKNIHQLRNIMARLVSTHIRHNE
EEECCCEEEEEEEEHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
LSKLTEQQLVIQLLMHMIHYVPRTYHSNQSILNDDKVNQVCDYIELHFHEDLSLSELSEY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHHHHHHH
VGWSESHLSKKFAESLGVGFQHFLNTTRIEHAKLDLTYTDETITDIALQNGFSSAASFAR
CCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEEEEEECCCHHHHHHHHCCHHHHHHHHH
TFKHFTHQTPKQYRGDRPAITENQQSAQHNYHDRELILLLNDYIEEMNHFIEDIEKVNYK
HHHHHHCCCCHHHCCCCCCCCCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCE
EITFQPTNHQLNQFNHIIQVGYLRNLLNTQYQSQLLTCHHDFYVNEVLAYDVMPYIMKKL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAPFTYDAEISNIFYDIDLCLDFLLDHNFSLTMHLDQYDSRDYIDAFKIFIHHVALHVSH
CCCEEECCCHHHHEEEHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
RKDLKFNLHLTTLHTSLIEMIDYFKALFPNGGLYIHLDQATERHLPLLKRLEPHIDHFVF
CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEE
DANSNDAVDFNKMNDDEFKTSSQMIINKTNYLIDLMHRHHLKRPLILLNWNTLTGDTFIT
ECCCCCCEECCCCCCHHHCCCCCEEEECHHHHHHHHHHHHCCCCEEEEECCEECCCEEEE
NGEYFRGGIIIEQLLKLSSKVEGIGYWLNYDLHVSHCKNERDYMNSIELFHQYNGKRPVY
CCCEEECHHHHHHHHHHHHCCCCEEEEEEEEEEEHHCCCHHHHHHHHHHHHHCCCCCCEE
FTALLFNKLTSNILYSDDTCIVTGTDSNFQILLYDAKHFNPYLALDNQMNMRATEMIHLN
EHHHHHHHHHHCCEECCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCEEEEEEEEE
INALEEGMYKIKHFTLDKENGALFNLWRKHHTIHGMDKDSIDYVNRMSFPKLEVYDIDMT
HHHHHHHHHHHHEEEEECCCCHHHHHHHHCCEECCCCCCHHHHHHHCCCCCEEEEECCCC
DTLALNIKMITNGIHLIEVKRYPSS
CEEEEEEEEEECCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]