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The map label for this gene is yggS [C]

Identifier: 82703845

GI number: 82703845

Start: 3138419

End: 3139153

Strand: Direct

Name: yggS [C]

Synonym: Nmul_A2732

Alternate gene names: 82703845

Gene position: 3138419-3139153 (Clockwise)

Preceding gene: 82703844

Following gene: 82703851

Centisome position: 98.56

GC content: 55.37

Gene sequence:

>735_bases
TTGGAACCGAATACATCAACCGTCGCGGCTGGATTGAAAAAAGTAAGAGCCCATATCACCGAGATCGCAGGGAAGGCAGG
CCGGCAAGCCGGGGAAATCACCCTTTTGGCCGCCAGCAAAACCAATCCCGCAGAGCGGTTACGGGAAGCGTTTGTTGCAG
GACAAACCGTTTTCGGCGAAAACTATTTGCAGGAAGCGCTGGTCAAAATCGACGCCCTTAAGGATTTACCGATCGAGTGG
CATTTCATCGGGCCTATCCAGAGCAACAAGACCCGGCGCATCGCGGAAAACTTTGCGTGGGTACACAGTGTAGACCGCAA
AAAAATTGCCGAGCGCCTGTCGAAGGACAGGCCCGAAGCGCTTCCACCGCTTCAGATATGCTTGCAGGTCAATGTAAGCG
GCGAAGACAGCAAAAGCGGTGTCGCCCCGGAAGAAGTGGCCGATCTGGCAGCGCATGTTGCCGAATTGCCGCGATTAAGG
TTGCGGGGAGTAATGGCAATCCCTGAGCTTACCAAATTCACCGCCTTGCAGCGCAGCCAGTTTCGAATGCTGAAGGAAGC
CTACGACCAGCTCAAGCAGAGCGGGTATGATGTGGACACCATCTCGATGGGGATGTCGGAAGACCTCGAACTCGCCATTC
AGGAAGGAGCAACGATGGTGCGGATCGGTACAGCCATTTTTGGACCGAGACGCTATCCTATCCCGGAGGAGCTTGTCCGG
CAAGCACAGCCCTGA

Upstream 100 bases:

>100_bases
CCCCAGGGATGAGTAGTTCTACTATGCTCACGCACACCCTCAACTATCGTTCCCACCGCACGGACCAGGTTGTCCGGAGC
GGCTGGTAAAAGGCAGAAAA

Downstream 100 bases:

>100_bases
ACAAGCCTTTCTCATTCGTCATTCCCGCGGAAGAGGGAATCCAGCAGTTTTGAAATAGCGATTTCCGTCACCGAAATAAC
CGGTTGCCGGCTATTTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEPNTSTVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEALVKIDALKDLPIEW
HFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLR
LRGVMAIPELTKFTALQRSQFRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYPIPEELVR
QAQP

Sequences:

>Translated_244_residues
MEPNTSTVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEALVKIDALKDLPIEW
HFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLR
LRGVMAIPELTKFTALQRSQFRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYPIPEELVR
QAQP
>Mature_244_residues
MEPNTSTVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEALVKIDALKDLPIEW
HFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLR
LRGVMAIPELTKFTALQRSQFRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYPIPEELVR
QAQP

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=260, Percent_Identity=32.6923076923077, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1789321, Length=230, Percent_Identity=51.7391304347826, Blast_Score=230, Evalue=8e-62,
Organism=Caenorhabditis elegans, GI17533025, Length=210, Percent_Identity=37.6190476190476, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=215, Percent_Identity=35.3488372093023, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI45550861, Length=248, Percent_Identity=37.5, Blast_Score=134, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26994; Mature: 26994

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPNTSTVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHH
NYLQEALVKIDALKDLPIEWHFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLRLRGVMAIPELTKFTALQRSQ
CCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
FRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYPIPEELVR
HHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHCCCEEEEEHHHHCCCCCCCCCHHHHH
QAQP
CCCC
>Mature Secondary Structure
MEPNTSTVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHH
NYLQEALVKIDALKDLPIEWHFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEA
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LPPLQICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLRLRGVMAIPELTKFTALQRSQ
CCHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
FRMLKEAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYPIPEELVR
HHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHCCCEEEEEHHHHCCCCCCCCCHHHHH
QAQP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]