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The map label for this gene is bfrD [H]

Identifier: 82703506

GI number: 82703506

Start: 2723216

End: 2725504

Strand: Reverse

Name: bfrD [H]

Synonym: Nmul_A2391

Alternate gene names: 82703506

Gene position: 2725504-2723216 (Counterclockwise)

Preceding gene: 82703507

Following gene: 82703505

Centisome position: 85.59

GC content: 54.61

Gene sequence:

>2289_bases
GTGAAACAGTTATCCAGATTCAAGCCCATATCCCGTTTTTTGGTCCCTATAACCCTGTTTTGTTCATGGTCATTGATACC
GGTGCCTGCAGCCGCTCAAGATGCAGCGACATCTCCAGATACAGTGATATCCCAAGGTGGGACGTCTCCAGACGCAGCCA
CGGCTCAAGATGCAGTGGCGACTCAAGATGCAGGGAAAGAGAAGGAAAAAAATGCGACCCTGCCGGAGATCAAGGTGACT
ACCGGGCGGGTCCGTCCAGGAACGATCGAGGACGTTGCCCGCACCGGCAGCAAGACAGATACTCCCTTGCGTGACATCCC
TGCGACAGTCAATGTCGTGCCGGCGTCCACTCTTAAGGAGCAGGGTGTCATCGAGATGAATGACGCCATGCGCAATGTCA
GCAGCGTGCAGCCACTCATGGGGGGTGGTTACGGATTTGCCAACAGCTTTACATCGCGCGGCCTGGCGCTCAGTTTTTTC
CGTGACTATATTCCGGATGGGAACCTCCAGAACAACTATTTCCGCACGATGTACGACATCGAGCGTATTGAAGTGCTGAA
GGGCCCCGGCTCCGCGCTATTCGGAGTTGCCGGTCCCGGGGGCAGCCTCAACCTGGTGACGAAGCAGCCGCGGTATAGTT
TCGGACTGTCCGCAGGCACCATGCTGGGCAGTTTCGGTACACGCAACGGCTATGTGGACGTGACAGGTGCCATCCCTTAT
CTGCCGAATGTAGCGGGACGTCTCATCGCGGATATGGAGCACACGGACGGGTTTCGTGGCCTGGAGCGCAATATTGTGGA
GGCTTCCCCCAGCTTCACCTGGAGACTGGCGGACGATAAGACGCTCCATGTCGATTACGATCACCGCGAGCTCAAAATCA
AGCCCGATAATTACGGAATACTCTTTGATGCTAACTCTAATATCGCCAACGTATCCCGCGACACGCGCTATTACAGCCGG
TTCAACAAGACAGACCATACCATCAACCGCCTTGGCCTGACGCACCACTGGACCCTATCGGACACTTTGAGCATGCGCAC
CGCGTTCGTCTACGATGCGCGAACGCTCGAGCTATTGCGCAATGCCGGCGGCAATCAGGGTAATGCGGCCGGGTTTAGCA
CGGGACGCACCGCGTACCAGCAGTTCGATAATGCCGGTTACACCACCCTGCAAAATGAGTTCGTTTGGAAAACGAGCACG
GGGCCTGTCAAGCATACTTTTCTGGGAGGTTTCGAATACAAGAATGTAGACATCAACGCGGCCCGCTCGACTTACACTCT
GGACCGCATAAACATCTTTAACCCGGTAGTGGAAACTTCACTGAACGACCCTAAAGTTAATGGCGGTTCCCTGACTTTTG
ACCGCCATATTGGCAGTGACCAAGTCTCGTTTTATGCCCAGGACCAGATCGACTTGACCGAGCAGTTCAAGCTTCGCCTT
GGAATCCGCAACGACCTGGTGAAATACAGCGATAAAGGCTTGCAAAGAGCAAACCCGACAGCGCACGGATCACCCATCCG
ATATCGTGAAATAGTGCAAACGAAGTCCATGACCACCTACTCCACGGGCGGTGTGTATCAGCCCACCCAGAATCTGGCAT
TTTACGCAGGTTACAGCACCGGCGCCTTCATCAATCTGTCCACCGAGCCGCAGGCGCTCTCCACAGCACCCGAGACGTCG
GATCAGGTTGAAGTGGGGGCAAAAATGATGCTTTTCGACGGAAAGGCCGATCTCAATGTGGCGCTGTTTCAATCCAGCCG
CAATAATTATTTCGTCACCTTGCCCGGTTCCGGCAACATCCCGACTCCGGATGGGAAGGATCGCACGCGCGGAGTGGAGG
TATCGCTTGGCTTTCGTCCAGTTGCCGGATGGAGCATCATCGGTAATGGTGTGGTGATGGACCCGGAAACACGAGCAGGC
AATGTTGCCACCAACTCTGTGCTTGGCATTACGAGAAGTGTCTTTGGAACTCGGCCCGTCGGGGTCGCGACCACCATGGG
CAATCTGTGGATGACGTACGAGATACAGAGCGGCCTGGCCCGTGGATTGATGTTCGGGTTCGGGGTCACCTATAAGGGAG
ATTCCTATGCCGACTCGCTGAATCTTCTCAAGGTGCCATCTTATGTCGTGTTTGACGCAGCCGCATCTTATCGCATCAAA
AAAGTTGATCTCGCAGTCAACATAAAGAACCTCACGGATAAAACCTACTATACCAATCCGACATTCGCGGGCGCATTGCC
TGGAAACCCTCTCAGCGCCTTCGGTTCCATCCGATTCAATTTCAACTGA

Upstream 100 bases:

>100_bases
TAATTTCCCGCCCAGTTTCGGTGGGAAAAAGAATCCACAGCCAGCCAACGCCTTCGTGCTTGTAGCCAGCCAGTAGTAAA
AAAATTAAAAGAGGCTATAA

Downstream 100 bases:

>100_bases
TTTCAACTGATGGTAGAAGAGGTTCAGCTCCCCTGCAGGGAATCATCCTTGCTGGGGAAAAAACATCTTTTCGCTTGAAC
ATGCTTCTATAACAACTCCT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 762; Mature: 762

Protein sequence:

>762_residues
MKQLSRFKPISRFLVPITLFCSWSLIPVPAAAQDAATSPDTVISQGGTSPDAATAQDAVATQDAGKEKEKNATLPEIKVT
TGRVRPGTIEDVARTGSKTDTPLRDIPATVNVVPASTLKEQGVIEMNDAMRNVSSVQPLMGGGYGFANSFTSRGLALSFF
RDYIPDGNLQNNYFRTMYDIERIEVLKGPGSALFGVAGPGGSLNLVTKQPRYSFGLSAGTMLGSFGTRNGYVDVTGAIPY
LPNVAGRLIADMEHTDGFRGLERNIVEASPSFTWRLADDKTLHVDYDHRELKIKPDNYGILFDANSNIANVSRDTRYYSR
FNKTDHTINRLGLTHHWTLSDTLSMRTAFVYDARTLELLRNAGGNQGNAAGFSTGRTAYQQFDNAGYTTLQNEFVWKTST
GPVKHTFLGGFEYKNVDINAARSTYTLDRINIFNPVVETSLNDPKVNGGSLTFDRHIGSDQVSFYAQDQIDLTEQFKLRL
GIRNDLVKYSDKGLQRANPTAHGSPIRYREIVQTKSMTTYSTGGVYQPTQNLAFYAGYSTGAFINLSTEPQALSTAPETS
DQVEVGAKMMLFDGKADLNVALFQSSRNNYFVTLPGSGNIPTPDGKDRTRGVEVSLGFRPVAGWSIIGNGVVMDPETRAG
NVATNSVLGITRSVFGTRPVGVATTMGNLWMTYEIQSGLARGLMFGFGVTYKGDSYADSLNLLKVPSYVVFDAAASYRIK
KVDLAVNIKNLTDKTYYTNPTFAGALPGNPLSAFGSIRFNFN

Sequences:

>Translated_762_residues
MKQLSRFKPISRFLVPITLFCSWSLIPVPAAAQDAATSPDTVISQGGTSPDAATAQDAVATQDAGKEKEKNATLPEIKVT
TGRVRPGTIEDVARTGSKTDTPLRDIPATVNVVPASTLKEQGVIEMNDAMRNVSSVQPLMGGGYGFANSFTSRGLALSFF
RDYIPDGNLQNNYFRTMYDIERIEVLKGPGSALFGVAGPGGSLNLVTKQPRYSFGLSAGTMLGSFGTRNGYVDVTGAIPY
LPNVAGRLIADMEHTDGFRGLERNIVEASPSFTWRLADDKTLHVDYDHRELKIKPDNYGILFDANSNIANVSRDTRYYSR
FNKTDHTINRLGLTHHWTLSDTLSMRTAFVYDARTLELLRNAGGNQGNAAGFSTGRTAYQQFDNAGYTTLQNEFVWKTST
GPVKHTFLGGFEYKNVDINAARSTYTLDRINIFNPVVETSLNDPKVNGGSLTFDRHIGSDQVSFYAQDQIDLTEQFKLRL
GIRNDLVKYSDKGLQRANPTAHGSPIRYREIVQTKSMTTYSTGGVYQPTQNLAFYAGYSTGAFINLSTEPQALSTAPETS
DQVEVGAKMMLFDGKADLNVALFQSSRNNYFVTLPGSGNIPTPDGKDRTRGVEVSLGFRPVAGWSIIGNGVVMDPETRAG
NVATNSVLGITRSVFGTRPVGVATTMGNLWMTYEIQSGLARGLMFGFGVTYKGDSYADSLNLLKVPSYVVFDAAASYRIK
KVDLAVNIKNLTDKTYYTNPTFAGALPGNPLSAFGSIRFNFN
>Mature_762_residues
MKQLSRFKPISRFLVPITLFCSWSLIPVPAAAQDAATSPDTVISQGGTSPDAATAQDAVATQDAGKEKEKNATLPEIKVT
TGRVRPGTIEDVARTGSKTDTPLRDIPATVNVVPASTLKEQGVIEMNDAMRNVSSVQPLMGGGYGFANSFTSRGLALSFF
RDYIPDGNLQNNYFRTMYDIERIEVLKGPGSALFGVAGPGGSLNLVTKQPRYSFGLSAGTMLGSFGTRNGYVDVTGAIPY
LPNVAGRLIADMEHTDGFRGLERNIVEASPSFTWRLADDKTLHVDYDHRELKIKPDNYGILFDANSNIANVSRDTRYYSR
FNKTDHTINRLGLTHHWTLSDTLSMRTAFVYDARTLELLRNAGGNQGNAAGFSTGRTAYQQFDNAGYTTLQNEFVWKTST
GPVKHTFLGGFEYKNVDINAARSTYTLDRINIFNPVVETSLNDPKVNGGSLTFDRHIGSDQVSFYAQDQIDLTEQFKLRL
GIRNDLVKYSDKGLQRANPTAHGSPIRYREIVQTKSMTTYSTGGVYQPTQNLAFYAGYSTGAFINLSTEPQALSTAPETS
DQVEVGAKMMLFDGKADLNVALFQSSRNNYFVTLPGSGNIPTPDGKDRTRGVEVSLGFRPVAGWSIIGNGVVMDPETRAG
NVATNSVLGITRSVFGTRPVGVATTMGNLWMTYEIQSGLARGLMFGFGVTYKGDSYADSLNLLKVPSYVVFDAAASYRIK
KVDLAVNIKNLTDKTYYTNPTFAGALPGNPLSAFGSIRFNFN

Specific function: Probably involved in iron transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=697, Percent_Identity=24.390243902439, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1787024, Length=724, Percent_Identity=24.4475138121547, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1787723, Length=685, Percent_Identity=25.1094890510949, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 83062; Mature: 83062

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLSRFKPISRFLVPITLFCSWSLIPVPAAAQDAATSPDTVISQGGTSPDAATAQDAVA
CCCHHHHCHHHHHHHHHHHEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHH
TQDAGKEKEKNATLPEIKVTTGRVRPGTIEDVARTGSKTDTPLRDIPATVNVVPASTLKE
HCCCCCCHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHHHCCCEEEEEECHHHHH
QGVIEMNDAMRNVSSVQPLMGGGYGFANSFTSRGLALSFFRDYIPDGNLQNNYFRTMYDI
CCCEEEHHHHHHHHHCCHHHCCCCCCHHHHHCCCEEHHHHHHHCCCCCCCCCHHHHHHHH
ERIEVLKGPGSALFGVAGPGGSLNLVTKQPRYSFGLSAGTMLGSFGTRNGYVDVTGAIPY
EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCC
LPNVAGRLIADMEHTDGFRGLERNIVEASPSFTWRLADDKTLHVDYDHRELKIKPDNYGI
CCCHHHHHHHCCHHCCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEECCCCEEE
LFDANSNIANVSRDTRYYSRFNKTDHTINRLGLTHHWTLSDTLSMRTAFVYDARTLELLR
EEECCCCCCCCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCHHHEEEEEEECHHHHHHHH
NAGGNQGNAAGFSTGRTAYQQFDNAGYTTLQNEFVWKTSTGPVKHTFLGGFEYKNVDINA
HCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECCEEEECEEEEC
ARSTYTLDRINIFNPVVETSLNDPKVNGGSLTFDRHIGSDQVSFYAQDQIDLTEQFKLRL
CCCEEEEEEEEHHCHHHHCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEEEE
GIRNDLVKYSDKGLQRANPTAHGSPIRYREIVQTKSMTTYSTGGVYQPTQNLAFYAGYST
CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEECCCCCEEEEEECCC
GAFINLSTEPQALSTAPETSDQVEVGAKMMLFDGKADLNVALFQSSRNNYFVTLPGSGNI
CEEEEECCCCCHHCCCCCCCCHHHCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCC
PTPDGKDRTRGVEVSLGFRPVAGWSIIGNGVVMDPETRAGNVATNSVLGITRSVFGTRPV
CCCCCCCCCCCEEEEECCEECCCCEEECCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCC
GVATTMGNLWMTYEIQSGLARGLMFGFGVTYKGDSYADSLNLLKVPSYVVFDAAASYRIK
EEEEECCCEEEEEEHHHHHHHHHHHHCCEEECCCCCCCCCEEEECCCEEEEECCCCCEEE
KVDLAVNIKNLTDKTYYTNPTFAGALPGNPLSAFGSIRFNFN
EEEEEEEEECCCCCEEECCCCEECCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKQLSRFKPISRFLVPITLFCSWSLIPVPAAAQDAATSPDTVISQGGTSPDAATAQDAVA
CCCHHHHCHHHHHHHHHHHEECCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHH
TQDAGKEKEKNATLPEIKVTTGRVRPGTIEDVARTGSKTDTPLRDIPATVNVVPASTLKE
HCCCCCCHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHHHCCCEEEEEECHHHHH
QGVIEMNDAMRNVSSVQPLMGGGYGFANSFTSRGLALSFFRDYIPDGNLQNNYFRTMYDI
CCCEEEHHHHHHHHHCCHHHCCCCCCHHHHHCCCEEHHHHHHHCCCCCCCCCHHHHHHHH
ERIEVLKGPGSALFGVAGPGGSLNLVTKQPRYSFGLSAGTMLGSFGTRNGYVDVTGAIPY
EEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCC
LPNVAGRLIADMEHTDGFRGLERNIVEASPSFTWRLADDKTLHVDYDHRELKIKPDNYGI
CCCHHHHHHHCCHHCCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCEEEECCCCEEE
LFDANSNIANVSRDTRYYSRFNKTDHTINRLGLTHHWTLSDTLSMRTAFVYDARTLELLR
EEECCCCCCCCCHHHHHHHHHCCCCHHHHHCCCEEEEECCCHHHEEEEEEECHHHHHHHH
NAGGNQGNAAGFSTGRTAYQQFDNAGYTTLQNEFVWKTSTGPVKHTFLGGFEYKNVDINA
HCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECCEEEECEEEEC
ARSTYTLDRINIFNPVVETSLNDPKVNGGSLTFDRHIGSDQVSFYAQDQIDLTEQFKLRL
CCCEEEEEEEEHHCHHHHCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCEEEEEEE
GIRNDLVKYSDKGLQRANPTAHGSPIRYREIVQTKSMTTYSTGGVYQPTQNLAFYAGYST
CCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECCCCEECCCCCEEEEEECCC
GAFINLSTEPQALSTAPETSDQVEVGAKMMLFDGKADLNVALFQSSRNNYFVTLPGSGNI
CEEEEECCCCCHHCCCCCCCCHHHCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCC
PTPDGKDRTRGVEVSLGFRPVAGWSIIGNGVVMDPETRAGNVATNSVLGITRSVFGTRPV
CCCCCCCCCCCEEEEECCEECCCCEEECCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCC
GVATTMGNLWMTYEIQSGLARGLMFGFGVTYKGDSYADSLNLLKVPSYVVFDAAASYRIK
EEEEECCCEEEEEEHHHHHHHHHHHHCCEEECCCCCCCCCEEEECCCEEEEECCCCCEEE
KVDLAVNIKNLTDKTYYTNPTFAGALPGNPLSAFGSIRFNFN
EEEEEEEEECCCCCEEECCCCEECCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]