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The map label for this gene is yjfH [C]

Identifier: 82702991

GI number: 82702991

Start: 2156570

End: 2157409

Strand: Reverse

Name: yjfH [C]

Synonym: Nmul_A1870

Alternate gene names: 82702991

Gene position: 2157409-2156570 (Counterclockwise)

Preceding gene: 82702992

Following gene: 82702987

Centisome position: 67.75

GC content: 53.69

Gene sequence:

>840_bases
ATGAAGTTTATTACCTCTCGCGACAATCCCACCTTCAAAGAACTGGTTAAACTGCGGGAATCATCCCGGCAACGGCGAAT
TGCGGGACTGACGCTTCTTGACGGCATTCATCTGGTCGAAGCTTATTTTGCGCTGGGGAAGCCAGAAAAACTCGTCGCGA
GCGAGAGCGGGCGTGAAAACCCGGAAATCCGATTTTTGCTGGAAAAAGTAACAAAAGTGACGCAGGTGACAAAAGGCGGC
GGCTCCCATCGGGAAGCGGCAGCGATCGTCCTGCCGGACTTGTTGTTCCGCGAAGTTTCCACAGTAAAGACTGCAACAGG
TCTTATGGCTATAGTGCCGATTCCTTCTCCCGAAGCCATTCCCCTGAAAAAGAGAGGGCAGGCAGAAAGCTTCTGTGTAT
TGCTTGAAGCCATACAAGACCCTGGCAACGTCGGCTCCATACTGCGTTCCGCCGCTGCGGCGGGTGCAAGCGATGTGTAT
CTTTCCAACGATTGTGCCGATGCTTGGTCGCCGAAGACGCTTCGTGCCGCCATGGGCGCGCATTTTCTTGTGCGAATACA
CGAACGTGCCAACCTGGCAGAAGTTGCGCGGACATTCGGAGGCAAAGTAATTGCAAGCATACTGGATGCGAAAAAAAGTC
TTTACCAGATGCGATTGAGCGGCCCGGTAGCCTTCGTTTTCGGGAACGAGGGTGCGGGTTTGAGCGATGAGTTGCTTCAG
GTCGCCCATGAACGGATTACTATCCCCATGCCGGGGGATGCAGAATCACTGAATGCGGCGGCTGCGGCAGCAGTTTGTTT
TTTTGAGAGGGTGAGGCAAATGGAAGCGGGAATCGCATAA

Upstream 100 bases:

>100_bases
TTCTGGAAGTCAGGTATCAGGCAATTCCCATGGAACCGTTCAGGATGGGCTCGGGAATGGAGAAGACGATGGCGAACCCT
GGCGAGAACCCCAATCCTCA

Downstream 100 bases:

>100_bases
GTATCCGCTTTTTATTATCTTCTCCTCACGTCGTTAATATAGCTGCTATGGCAGCTTCCGACAGTTGCCTGACTGGCGCG
GCTCAACCTTTCCCCTCGGA

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGRENPEIRFLLEKVTKVTQVTKGG
GSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIPLKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVY
LSNDCADAWSPKTLRAAMGAHFLVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ
VAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAGIA

Sequences:

>Translated_279_residues
MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGRENPEIRFLLEKVTKVTQVTKGG
GSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIPLKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVY
LSNDCADAWSPKTLRAAMGAHFLVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ
VAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAGIA
>Mature_279_residues
MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGRENPEIRFLLEKVTKVTQVTKGG
GSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIPLKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVY
LSNDCADAWSPKTLRAAMGAHFLVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ
VAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAGIA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=93, Percent_Identity=44.0860215053763, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1790623, Length=148, Percent_Identity=33.7837837837838, Blast_Score=85, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24666840, Length=281, Percent_Identity=26.6903914590747, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29965; Mature: 29965

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGREN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
PEIRFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAI
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PLKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH
HFLVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ
HHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
VAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAGIA
HHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGREN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
PEIRFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAI
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
PLKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGA
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH
HFLVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQ
HHEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
VAHERITIPMPGDAESLNAAAAAAVCFFERVRQMEAGIA
HHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]