Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 82702984

GI number: 82702984

Start: 2148153

End: 2148533

Strand: Reverse

Name: rbfA

Synonym: Nmul_A1863

Alternate gene names: 82702984

Gene position: 2148533-2148153 (Counterclockwise)

Preceding gene: 82702985

Following gene: 82702983

Centisome position: 67.47

GC content: 50.92

Gene sequence:

>381_bases
ATGCCCAAAGATTATTCCCGCACGTTGCGGATTGCCGATCAGATTCAGCGTGAATTGGCCGATCTGATCCGCAACGAACT
CAAGGACCCGCGCATAGGCATGATTACCTTGACTGGTGTTGAGGTGAGTCAGGATTATGCGCACGCTAAAGTTTTCTATA
CCACGCTGCATAATGAAAGCGACAACTTTCTCGTCCAGAACGGGCTGGAAAATGCCGCGGGCTTTTTGCGCACCCAGCTG
CTGCATCGGTTGAAGCTACGCGTCATCCCACAACTGCATTTCATTTATGATGAATCCATCGAACGTGGAGTCCGGTTGTC
GCAACTGATAGATGAAGCCGTGGCTTCCGACCGTTCTGAAAAAGAAACCGACAGCACCTGA

Upstream 100 bases:

>100_bases
AACTTTAACGATATCCAGGTGGGCGATCAGTTGGAAACCTACGAAATCCAGGTAATCGCGCGGACTCTGTAGCGGGGCGA
AAGTCCTGCATTGAAGTTTT

Downstream 100 bases:

>100_bases
ATTGTTTATCACGCTTATATCTGCTCGAGTTCGTGCAGCTATTTCTGCAAGTTGCGTGACCGAAGTCGGATGTCACCCGG
CCCATAGTGAACCCTCCCAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MPKDYSRTLRIADQIQRELADLIRNELKDPRIGMITLTGVEVSQDYAHAKVFYTTLHNESDNFLVQNGLENAAGFLRTQL
LHRLKLRVIPQLHFIYDESIERGVRLSQLIDEAVASDRSEKETDST

Sequences:

>Translated_126_residues
MPKDYSRTLRIADQIQRELADLIRNELKDPRIGMITLTGVEVSQDYAHAKVFYTTLHNESDNFLVQNGLENAAGFLRTQL
LHRLKLRVIPQLHFIYDESIERGVRLSQLIDEAVASDRSEKETDST
>Mature_125_residues
PKDYSRTLRIADQIQRELADLIRNELKDPRIGMITLTGVEVSQDYAHAKVFYTTLHNESDNFLVQNGLENAAGFLRTQLL
HRLKLRVIPQLHFIYDESIERGVRLSQLIDEAVASDRSEKETDST

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=121, Percent_Identity=42.1487603305785, Blast_Score=102, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NITMU (Q2Y7W3)

Other databases:

- EMBL:   CP000103
- RefSeq:   YP_412550.1
- ProteinModelPortal:   Q2Y7W3
- SMR:   Q2Y7W3
- STRING:   Q2Y7W3
- GeneID:   3786607
- GenomeReviews:   CP000103_GR
- KEGG:   nmu:Nmul_A1863
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q2Y7W3
- ProtClustDB:   PRK00521
- BioCyc:   NMUL323848:NMUL_A1863-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14513; Mature: 14381

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKDYSRTLRIADQIQRELADLIRNELKDPRIGMITLTGVEVSQDYAHAKVFYTTLHNES
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCC
DNFLVQNGLENAAGFLRTQLLHRLKLRVIPQLHFIYDESIERGVRLSQLIDEAVASDRSE
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
KETDST
CCCCCC
>Mature Secondary Structure 
PKDYSRTLRIADQIQRELADLIRNELKDPRIGMITLTGVEVSQDYAHAKVFYTTLHNES
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCC
DNFLVQNGLENAAGFLRTQLLHRLKLRVIPQLHFIYDESIERGVRLSQLIDEAVASDRSE
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC
KETDST
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA