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The map label for this gene is hypD2 [H]

Identifier: 82702791

GI number: 82702791

Start: 1904464

End: 1905621

Strand: Direct

Name: hypD2 [H]

Synonym: Nmul_A1667

Alternate gene names: 82702791

Gene position: 1904464-1905621 (Clockwise)

Preceding gene: 82702790

Following gene: 82702792

Centisome position: 59.81

GC content: 56.48

Gene sequence:

>1158_bases
ATGACACTTACCGCTCAGGAGTGGCTAAAAAAAATCCATGAGCTGCCACTCGATCGCCCTGTACGTATCATGAACGTATG
CGGAGGCCATGAGCGTTCGATTACCATGGCAGGAATCCGAAGCGCCCTGCCGGAATGTGTCGAACTCATCGCCGGGCCAG
GGTGCCCGGTCTGTGTCTGCCCTGAAGAAGATGTATACCAGGCGATTCAGCTCGCGCTGCGCACCGATATGATTCTGGTC
ACTTTCGGTGATATGCTGCGCGTGCCCGTGAACGTGCCGAAGAAAGAAGTGCGATCCCTGGAGCAGGCCAAGGCAGCAGG
AGCGGATGTGCGTCCCATTGCCAGTCCGCGCGAAGCAGTCAGGATAGCTCAGCAAAACGCGAAACGACAAGTCGTTTTCT
TTGCTGCGGGTTTTGAGACCACCACAGCCCCGGTAGCAGCCATGCTGCTGGAGGGGGTACCGGACAATTTATCCATCCTG
TTGTCAGCGCGGCGCACATGGCCTGCGGTCGCAATGCTGCTTGATTCTGATGCACCAGGCTTCGATGGGTTGGTGGCGCC
CGGTCATGTTTCCACTGTCATGGGGCCGGAGGAGTGGAATTTCGTCTTCGAAAAGCATGACATTCCCACTGCCGTTGCCG
GCTTCCAGCCCGTGTCACTGCTAGCCGCCATGTATTCCGTATTACGCCAACTGCTTGAAGGGAAGCGTTTTCTGGATAAT
TGTTATCCTGAGTTAGTGCGGCCCGGGGGAAATCGAGCCGCACAGGCGCAACTCGCGGAAGCATTGAATGACACGGATGC
CAACTGGCGCGGCATTGGTGTTATCCCATCTTCCGGTTTCAGTCTCCAAAAGCGCTTCGCAAAGAACGATGCGCGACTTC
AATTCCCCGATTTCGATACAGAGAACCGCAAGCGCGCTGGCCAGATGCCGCCCGGTTGCGAATGCGCGAGCGTAGTCCTT
GGAAGAATAAATCCAAACCAGTGCAAGATTTATGGCCATGCCTGCACACCGAAAACACCTGTGGGCCCGTGCATGGTGTC
GGACGAAGGTGCTTGCCGCATCTGGTGGGCAGCAGGCGTACGGGAGAACACGGCCACTGGAGTGAAGACGGTGGCAGATA
GCTCTTCTATTCCGGTGTTACCTGAGAAGCCAGAATAA

Upstream 100 bases:

>100_bases
TCGGCGAACTGGTGCAGAAACGGGGGAAATTAGCTGCGGACGTTCTGGCACAACCTGTGGCAGACCCGCAATCGATATTG
TCCAATACGGGAATGGGCGG

Downstream 100 bases:

>100_bases
GCGGCGCAGGTTTACGGCAAGAGGCTTGGAAGCCGGACGCATTATATCCTGTTCGGTTCTTTTCTCTCATTTCTCCTGCT
GCCCTATGAATATGAAAGAG

Product: hydrogenase formation HypD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTLTAQEWLKKIHELPLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVCPEEDVYQAIQLALRTDMILV
TFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAVRIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVPDNLSIL
LSARRTWPAVAMLLDSDAPGFDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDN
CYPELVRPGGNRAAQAQLAEALNDTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDTENRKRAGQMPPGCECASVVL
GRINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGVRENTATGVKTVADSSSIPVLPEKPE

Sequences:

>Translated_385_residues
MTLTAQEWLKKIHELPLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVCPEEDVYQAIQLALRTDMILV
TFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAVRIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVPDNLSIL
LSARRTWPAVAMLLDSDAPGFDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDN
CYPELVRPGGNRAAQAQLAEALNDTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDTENRKRAGQMPPGCECASVVL
GRINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGVRENTATGVKTVADSSSIPVLPEKPE
>Mature_384_residues
TLTAQEWLKKIHELPLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVCPEEDVYQAIQLALRTDMILVT
FGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAVRIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVPDNLSILL
SARRTWPAVAMLLDSDAPGFDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDNC
YPELVRPGGNRAAQAQLAEALNDTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDTENRKRAGQMPPGCECASVVLG
RINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGVRENTATGVKTVADSSSIPVLPEKPE

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=355, Percent_Identity=38.5915492957746, Blast_Score=241, Evalue=6e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41723; Mature: 41591

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTAQEWLKKIHELPLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVC
CCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEC
PEEDVYQAIQLALRTDMILVTFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAV
CCHHHHHHHHHHHHHCEEEEEECCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
RIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVPDNLSILLSARRTWPAVAMLLDSDAPG
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCC
FDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDN
CCCEECCCCHHCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
CYPELVRPGGNRAAQAQLAEALNDTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDT
HHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCCCCC
ENRKRAGQMPPGCECASVVLGRINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGV
CHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCC
RENTATGVKTVADSSSIPVLPEKPE
CCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLTAQEWLKKIHELPLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVC
CCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEC
PEEDVYQAIQLALRTDMILVTFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAV
CCHHHHHHHHHHHHHCEEEEEECCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
RIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVPDNLSILLSARRTWPAVAMLLDSDAPG
HHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCC
FDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDN
CCCEECCCCHHCCCCCCCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
CYPELVRPGGNRAAQAQLAEALNDTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDT
HHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCCCCC
ENRKRAGQMPPGCECASVVLGRINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGV
CHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCC
RENTATGVKTVADSSSIPVLPEKPE
CCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]