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The map label for this gene is 82702301

Identifier: 82702301

GI number: 82702301

Start: 1349594

End: 1350571

Strand: Direct

Name: 82702301

Synonym: Nmul_A1172

Alternate gene names: NA

Gene position: 1349594-1350571 (Clockwise)

Preceding gene: 82702300

Following gene: 82702302

Centisome position: 42.38

GC content: 49.69

Gene sequence:

>978_bases
ATGAAAACCCCGCCTGAAGAGCTGTCTGAATTGCGCCGCAAACCCAACCGCGTTTTACCCGTAAAATGGGCGGTGAAGGG
CGTAGTCAAAGACTTGAAGTATGCGCGTGATTTATCCTTCTACCTGCTTAAACGAGAGAAGGCAGATGAAAGGCCGCTGG
TGAGGTTATATGAAAAGGCCCTATCTCCCCGTTATGATCGTCCCGTTTGCCTTTTTTGCAGCTTCGACAAGGATAGCGTT
GTCAGGGAGAACGTGTATTACTATCTCAATGCTCTGATGCTGGCCGGTTTCGATATCGTATTCGTCAGTTCAAGCGGCAT
GATTTCTGGAAGCGATCTGGAAAAACTGTCTCGATGCTGTATCGCAATAATAAACCGTGAGAACAAAGGCTACGATTTCT
ATGGGTGGAAAACGGCTCTGGAAAAATATCCCGAATATCGCGAGCACAGCGGTCTTCTGTTAGCCAACGACAGCGTTCTC
GGTCCGCTTTTCAGCATCGATAATATCATCGCCAGACTTGAAGGTAGCGAGGCTGATATCGTGGGAATGACGGATTCTTT
TCGTTTTTATCCCCACCTGCAGTCCTATTTCCTCTACTGCAAGAAAAAAACCGTATCCTCCGATGAATTTCTTCGCTTCT
TCACGGAAATCGAGGTTCTGGAATTCAAGCCGGCCATTGTTCGCAGATATGAAGTCGGTTTTTCCCGCTTCCTCAGCCGG
CGCTTTCGCCTTGCAGCGCTCTACAGTCTGGGACAGGTTCTTGCTCGAACTGATTACCATCAAAGGCCGCTGCAATGGGT
CGAATCGACCTTTCACCTGTGGAAGCCGCTTATTGCCGAGTCTGGATTCCCGTTCCTCAAAAAAAGCGTGCTGACAAGAA
GAGGTGTGAGCTTGGGGGAAGTTTCAGCGGTCCTCGCGGAGGCGGGCTCTCCCTACGAGACAGAAATTCTCAACGACTGG
ATATTGCCCCGCGGATAA

Upstream 100 bases:

>100_bases
GCACTGTGCTTTCCCCGTATGCTGCGGTTCGTGATGACAGAAAAGCAAGCGAAGCTGATACCCTGAATACATTGATTGCC
ATGCTGGGGGGCAGAGGGTC

Downstream 100 bases:

>100_bases
GACAGAATTGCTCGACGGCGATTTCCCTTCGTCATTCCCTTGAAAGCCTCGAAGAAGGAATCCGGAACCCTCGCATACGG
ATTTGCCCCTTCCGCTGAAG

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKTPPEELSELRRKPNRVLPVKWAVKGVVKDLKYARDLSFYLLKREKADERPLVRLYEKALSPRYDRPVCLFCSFDKDSV
VRENVYYYLNALMLAGFDIVFVSSSGMISGSDLEKLSRCCIAIINRENKGYDFYGWKTALEKYPEYREHSGLLLANDSVL
GPLFSIDNIIARLEGSEADIVGMTDSFRFYPHLQSYFLYCKKKTVSSDEFLRFFTEIEVLEFKPAIVRRYEVGFSRFLSR
RFRLAALYSLGQVLARTDYHQRPLQWVESTFHLWKPLIAESGFPFLKKSVLTRRGVSLGEVSAVLAEAGSPYETEILNDW
ILPRG

Sequences:

>Translated_325_residues
MKTPPEELSELRRKPNRVLPVKWAVKGVVKDLKYARDLSFYLLKREKADERPLVRLYEKALSPRYDRPVCLFCSFDKDSV
VRENVYYYLNALMLAGFDIVFVSSSGMISGSDLEKLSRCCIAIINRENKGYDFYGWKTALEKYPEYREHSGLLLANDSVL
GPLFSIDNIIARLEGSEADIVGMTDSFRFYPHLQSYFLYCKKKTVSSDEFLRFFTEIEVLEFKPAIVRRYEVGFSRFLSR
RFRLAALYSLGQVLARTDYHQRPLQWVESTFHLWKPLIAESGFPFLKKSVLTRRGVSLGEVSAVLAEAGSPYETEILNDW
ILPRG
>Mature_325_residues
MKTPPEELSELRRKPNRVLPVKWAVKGVVKDLKYARDLSFYLLKREKADERPLVRLYEKALSPRYDRPVCLFCSFDKDSV
VRENVYYYLNALMLAGFDIVFVSSSGMISGSDLEKLSRCCIAIINRENKGYDFYGWKTALEKYPEYREHSGLLLANDSVL
GPLFSIDNIIARLEGSEADIVGMTDSFRFYPHLQSYFLYCKKKTVSSDEFLRFFTEIEVLEFKPAIVRRYEVGFSRFLSR
RFRLAALYSLGQVLARTDYHQRPLQWVESTFHLWKPLIAESGFPFLKKSVLTRRGVSLGEVSAVLAEAGSPYETEILNDW
ILPRG

Specific function: Could have an enzymatic function [H]

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To V.anguillarum virulence protein virA [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007739 [H]

Pfam domain/function: PF05045 RgpF [H]

EC number: NA

Molecular weight: Translated: 37648; Mature: 37648

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPPEELSELRRKPNRVLPVKWAVKGVVKDLKYARDLSFYLLKREKADERPLVRLYEKA
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LSPRYDRPVCLFCSFDKDSVVRENVYYYLNALMLAGFDIVFVSSSGMISGSDLEKLSRCC
HCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH
IAIINRENKGYDFYGWKTALEKYPEYREHSGLLLANDSVLGPLFSIDNIIARLEGSEADI
HHHHCCCCCCCCCHHHHHHHHHCCCHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCE
VGMTDSFRFYPHLQSYFLYCKKKTVSSDEFLRFFTEIEVLEFKPAIVRRYEVGFSRFLSR
EECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RFRLAALYSLGQVLARTDYHQRPLQWVESTFHLWKPLIAESGFPFLKKSVLTRRGVSLGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH
VSAVLAEAGSPYETEILNDWILPRG
HHHHHHHCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MKTPPEELSELRRKPNRVLPVKWAVKGVVKDLKYARDLSFYLLKREKADERPLVRLYEKA
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LSPRYDRPVCLFCSFDKDSVVRENVYYYLNALMLAGFDIVFVSSSGMISGSDLEKLSRCC
HCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH
IAIINRENKGYDFYGWKTALEKYPEYREHSGLLLANDSVLGPLFSIDNIIARLEGSEADI
HHHHCCCCCCCCCHHHHHHHHHCCCHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCE
VGMTDSFRFYPHLQSYFLYCKKKTVSSDEFLRFFTEIEVLEFKPAIVRRYEVGFSRFLSR
EECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
RFRLAALYSLGQVLARTDYHQRPLQWVESTFHLWKPLIAESGFPFLKKSVLTRRGVSLGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHH
VSAVLAEAGSPYETEILNDWILPRG
HHHHHHHCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]