Click here to switch to the map view.

The map label for this gene is cspA [H]

Identifier: 82702264

GI number: 82702264

Start: 1305080

End: 1305295

Strand: Reverse

Name: cspA [H]

Synonym: Nmul_A1135

Alternate gene names: 82702264

Gene position: 1305295-1305080 (Counterclockwise)

Preceding gene: 82702266

Following gene: 82702263

Centisome position: 40.99

GC content: 43.52

Gene sequence:

>216_bases
ATGGCAACCGGCACAGTAAAATGGTTCAATGGAACAAAAGGCTTTGGTTTTATTACCCCTGATGAGGGCAATGAGGATTT
ATTCGCTCACTTCTCCGCAATCAATATTTTTGGAAACACCGGCGGATTCAAAACGCTTCAGGAAGGTCAAAAAGTAACGT
TTGAGATTACGAACGGCCCGAAGGGCAAACAGGCATCAAACATTCAATCCGCTTAA

Upstream 100 bases:

>100_bases
TATTCGTAGCCCAGGGGGACAATTGAGCGCGTTGCACATGTAACCTCTCTTTTGACGGGCGTGTTTCCGGATTTCCGCTT
ACTTTTTTGAGGAGGTAAAA

Downstream 100 bases:

>100_bases
AGATTTTATGCCAGGGACAAACGCATCCTCTGTAGTCATTGCAGAATTACTTAATTCAAACAAGAGCGGAAAAAAGCCAT
AGTCAGTAATATTTCGGGTT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MATGTVKWFNGTKGFGFITPDEGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEITNGPKGKQASNIQSA

Sequences:

>Translated_71_residues
MATGTVKWFNGTKGFGFITPDEGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEITNGPKGKQASNIQSA
>Mature_70_residues
ATGTVKWFNGTKGFGFITPDEGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEITNGPKGKQASNIQSA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=64.6153846153846, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1789979, Length=68, Percent_Identity=58.8235294117647, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI1787107, Length=68, Percent_Identity=54.4117647058823, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=63.0769230769231, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=54.5454545454545, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=56.0606060606061, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=57.5757575757576, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7601; Mature: 7469

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNGTKGFGFITPDEGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEITNGP
CCCCEEEECCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCC
KGKQASNIQSA
CCCCCCCCCCC
>Mature Secondary Structure 
ATGTVKWFNGTKGFGFITPDEGNEDLFAHFSAINIFGNTGGFKTLQEGQKVTFEITNGP
CCCEEEECCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCC
KGKQASNIQSA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA