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The map label for this gene is exbD2 [H]

Identifier: 82702157

GI number: 82702157

Start: 1189924

End: 1190340

Strand: Reverse

Name: exbD2 [H]

Synonym: Nmul_A1028

Alternate gene names: 82702157

Gene position: 1190340-1189924 (Counterclockwise)

Preceding gene: 82702158

Following gene: 82702156

Centisome position: 37.38

GC content: 51.8

Gene sequence:

>417_bases
ATGAATTTTCAGCGCGGCAGAAACAAGGAAGAACCTGAAATCAATCTGGTCCCGATGATCGACGTGCTGCTTGTCATCCT
GATTTTTCTGATGATAACCACCACTTATTCCAAGTTTTCGGAACTGGAAATCACCTTGCCGCAAGCCTCCTCCGAAAAAT
CCAGCGAGCAGTCGAATGTCATCGATATCTCGGTCAGCGCGACAGGGAACTACATGATCAACCGGATGCCTCTCCAGTTT
CGGAATGTCGTGCAACTGCAGGAGGAATTACGAAGCGCGGCTGGCAGTCGGGTGGATCCTGTGATAGTCATCAACGCGGA
TGCCCAGGCAACGCATCAGTCGGTTATCACCGTGATGGAGGCGGCGCGGATGGCGGGATATAATCGTATCACTTTCACCA
CCCGGAATCGGGAATAG

Upstream 100 bases:

>100_bases
AAAAGGTTGATTACTGGGAACAGCTACCTGATCCGTCATAATCCGCACACCTGAAACTGCTTCTTCTATCACTGCTTCCG
TATTCCACCAACTCCCGGCC

Downstream 100 bases:

>100_bases
CGCCGGGAGCCCGATGAAAAACAGAAAGCTCGGCTTATTGGAAGCAACCGATTGAGGTGAAATCTTAAAATTGAGGCTGA
ATTATGGATCCGAAATTGCT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNFQRGRNKEEPEINLVPMIDVLLVILIFLMITTTYSKFSELEITLPQASSEKSSEQSNVIDISVSATGNYMINRMPLQF
RNVVQLQEELRSAAGSRVDPVIVINADAQATHQSVITVMEAARMAGYNRITFTTRNRE

Sequences:

>Translated_138_residues
MNFQRGRNKEEPEINLVPMIDVLLVILIFLMITTTYSKFSELEITLPQASSEKSSEQSNVIDISVSATGNYMINRMPLQF
RNVVQLQEELRSAAGSRVDPVIVINADAQATHQSVITVMEAARMAGYNRITFTTRNRE
>Mature_138_residues
MNFQRGRNKEEPEINLVPMIDVLLVILIFLMITTTYSKFSELEITLPQASSEKSSEQSNVIDISVSATGNYMINRMPLQF
RNVVQLQEELRSAAGSRVDPVIVINADAQATHQSVITVMEAARMAGYNRITFTTRNRE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15565; Mature: 15565

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFQRGRNKEEPEINLVPMIDVLLVILIFLMITTTYSKFSELEITLPQASSEKSSEQSNV
CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
IDISVSATGNYMINRMPLQFRNVVQLQEELRSAAGSRVDPVIVINADAQATHQSVITVME
EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
AARMAGYNRITFTTRNRE
HHHHCCCCEEEEEECCCC
>Mature Secondary Structure
MNFQRGRNKEEPEINLVPMIDVLLVILIFLMITTTYSKFSELEITLPQASSEKSSEQSNV
CCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
IDISVSATGNYMINRMPLQFRNVVQLQEELRSAAGSRVDPVIVINADAQATHQSVITVME
EEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
AARMAGYNRITFTTRNRE
HHHHCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]