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The map label for this gene is potC [H]

Identifier: 82702109

GI number: 82702109

Start: 1140294

End: 1141097

Strand: Reverse

Name: potC [H]

Synonym: Nmul_A0980

Alternate gene names: 82702109

Gene position: 1141097-1140294 (Counterclockwise)

Preceding gene: 82702110

Following gene: 82702108

Centisome position: 35.84

GC content: 52.99

Gene sequence:

>804_bases
GTGAAGCGCGGCAATCCCTGGTTGTGGTCCGCGGCCGTGCTGGTTTACGCCTTCCTTTATATCCCGCTGATCATCGTAGT
GCTGTACTCGTTCAACGATTCCAGGTTGAATGCTGAATGGGTCGGCTTTACCTTGTTCTGGTACAAGGCGCTGTTCAACA
ATACCGAAATGCTGCTGGCGGCACGCAACTCGCTCATCATCGCGCTTTGCGCCAGCTTCAGCGCTACCCTGCTGGGCACG
ATGTCCGGCCTGGCGATACACCGGTACAAGCTCAGGGTATTGCCGGTGCTGGTATTCACTCCAGTGGCAATGCCCGAAAT
CCTGCTTGGAGTATCGATCCTGCTATTCTTTTTGCAAGTCCTGAATTTCACGCTTGGAATGGTGTCCATCATCATTGCGC
ATACTACCTTCTGCATTGGTTTCGTTGCCATCATCGTGCGGGCGCGGCTGCAGGGAATGGATGAAAGCATCTTCGAAGCG
GCGCGCGATCTGGGCGCATCGCCTTGGCAAACTTTCCGCCTCGTCACCTTGCCGCTCATCATGCCGGCTGTAGTCGCAGG
CGCCTTGATGTCGTTCACCTTGTCCATCGATGATTTTGTCATTACATTCTTTACCAAGGGTGTAGGCGAACCGATTCTGC
CGATCCAGATTTATACGATGATAAAAGTGGCAGTGACGCCTGAAGTGAACGCCATCTCGACATTATTGATGTTGCTGACA
TTGGTCATGATCATCATTGCCGCCCGGCTTGAATCAAACGCCTCCTCGGAAGAGAGCACGAAACCTCGCAAAACGGTGAA
ATAA

Upstream 100 bases:

>100_bases
GGTTCTGCATTGTCCATCATGCTGACACTGGCGGTACTATCCGTAGCAGGCTTGACGACATGGTTCGCCCGTTCCGCAAC
CGGCCAGCGGGCGATATAGC

Downstream 100 bases:

>100_bases
GCGGTGAAACAAGCGGCGGAATAATGAACCCTCCACGACTCCTTTTTTTTCTGCTGGCATCACTGCTCACGTTCGCCGCG
GGATGTACTCCCCCGAATCC

Product: binding-protein dependent transport system inner membrane protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKRGNPWLWSAAVLVYAFLYIPLIIVVLYSFNDSRLNAEWVGFTLFWYKALFNNTEMLLAARNSLIIALCASFSATLLGT
MSGLAIHRYKLRVLPVLVFTPVAMPEILLGVSILLFFLQVLNFTLGMVSIIIAHTTFCIGFVAIIVRARLQGMDESIFEA
ARDLGASPWQTFRLVTLPLIMPAVVAGALMSFTLSIDDFVITFFTKGVGEPILPIQIYTMIKVAVTPEVNAISTLLMLLT
LVMIIIAARLESNASSEESTKPRKTVK

Sequences:

>Translated_267_residues
MKRGNPWLWSAAVLVYAFLYIPLIIVVLYSFNDSRLNAEWVGFTLFWYKALFNNTEMLLAARNSLIIALCASFSATLLGT
MSGLAIHRYKLRVLPVLVFTPVAMPEILLGVSILLFFLQVLNFTLGMVSIIIAHTTFCIGFVAIIVRARLQGMDESIFEA
ARDLGASPWQTFRLVTLPLIMPAVVAGALMSFTLSIDDFVITFFTKGVGEPILPIQIYTMIKVAVTPEVNAISTLLMLLT
LVMIIIAARLESNASSEESTKPRKTVK
>Mature_267_residues
MKRGNPWLWSAAVLVYAFLYIPLIIVVLYSFNDSRLNAEWVGFTLFWYKALFNNTEMLLAARNSLIIALCASFSATLLGT
MSGLAIHRYKLRVLPVLVFTPVAMPEILLGVSILLFFLQVLNFTLGMVSIIIAHTTFCIGFVAIIVRARLQGMDESIFEA
ARDLGASPWQTFRLVTLPLIMPAVVAGALMSFTLSIDDFVITFFTKGVGEPILPIQIYTMIKVAVTPEVNAISTLLMLLT
LVMIIIAARLESNASSEESTKPRKTVK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=253, Percent_Identity=43.8735177865613, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787081, Length=263, Percent_Identity=37.2623574144487, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787714, Length=247, Percent_Identity=32.7935222672065, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29572; Mature: 29572

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]