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The map label for this gene is sdhC [H]

Identifier: 82701992

GI number: 82701992

Start: 981879

End: 982256

Strand: Reverse

Name: sdhC [H]

Synonym: Nmul_A0863

Alternate gene names: 82701992

Gene position: 982256-981879 (Counterclockwise)

Preceding gene: 82701997

Following gene: 82701991

Centisome position: 30.85

GC content: 53.17

Gene sequence:

>378_bases
TTGCCAAAAAAGCGCCCCAAATATCTTGATCTCCTGAAAATCCGGCAGCCCCTGCCCGCAGTGATATCGATCCTGCACCG
CATCAGTGGAGCGCTGCTGTTCTTTCCCGGTATTCCTCTCGTCCTTTGCGGTCTCGATATGGCGCTAGGTTCCTCGGAAG
ACTACGCCCGGCTTCAATCCTTCTTGAACAATCCTATGGCAAAGTTCGGACTGATACTGGCGCTCTGGTTCTTCCTGCAT
CACTTCTGCGCAGGAATCCGTTATCTTGCGCTGGATCTGCATTACGGCGTAAAACTTGAACAGGCACGGCTAAGCAGCAA
AGTGGTTGTGGGAGCGGGAATCGTTCTCACCCTGCTGACCGGCGCTGTAATATGGTAA

Upstream 100 bases:

>100_bases
ATGGCTCGCGTGGTTGTATCCCCTGCAATAACGGTCTAAACTTAATCGCAACCTCAACGTGATCACCCTTCGAGTAACAA
TAACAACAGCGGGATCGAAA

Downstream 100 bases:

>100_bases
AGCGTCCAGTGCGGGCGATAACCGGGGCGCATTACGGGCTTCGCGACTGGCTGGCGCAACGCGTCACCGCCGCGGTAATG
GCCATCTATATCCTGATGCT

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MPKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQSFLNNPMAKFGLILALWFFLH
HFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLTGAVIW

Sequences:

>Translated_125_residues
MPKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQSFLNNPMAKFGLILALWFFLH
HFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLTGAVIW
>Mature_124_residues
PKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQSFLNNPMAKFGLILALWFFLHH
FCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLTGAVIW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=130, Percent_Identity=35.3846153846154, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13872; Mature: 13741

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQS
CCCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
FLNNPMAKFGLILALWFFLHHFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GAVIW
HHHCC
>Mature Secondary Structure 
PKKRPKYLDLLKIRQPLPAVISILHRISGALLFFPGIPLVLCGLDMALGSSEDYARLQS
CCCCCHHHHHHHHCCCHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
FLNNPMAKFGLILALWFFLHHFCAGIRYLALDLHYGVKLEQARLSSKVVVGAGIVLTLLT
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GAVIW
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]