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The map label for this gene is sodB [H]

Identifier: 82701635

GI number: 82701635

Start: 560303

End: 560920

Strand: Direct

Name: sodB [H]

Synonym: Nmul_A0501

Alternate gene names: 82701635

Gene position: 560303-560920 (Clockwise)

Preceding gene: 82701633

Following gene: 82701636

Centisome position: 17.6

GC content: 53.07

Gene sequence:

>618_bases
ATGAGCAATCAAAATACCGGTAGCGCCCCGTATGTTCTGCCCCCTTTACCTTATGCGGATAACGCGCTGGACCCCGTCAT
TTCGGCAAATACGCTTGGCTTCCACTACGGAAAACATCACAAGACCTATGTCGATAATCTCAACAAGCTGGTTGCAGGTA
CAGATCTGGCGGATATGTCTCTGGAGGAGATCATCACTTCCACTGCGGGAAAGGCAGACAAGGCAGGAATTTTCAATAAC
GCTGCCCAGGTGTGGAACCATACCTTTTACTGGAACAGTTTATCGCCCAAGGGCGGGGGTGAGCCGCCCGCGTCGCTGAA
GCAAAAAATCGAGACCGCTTTCGGCAGCGTGGAGGTTTGCAAAAAGGAACTGGCGACGGCAGCCACAACCCAGTTCGGCA
GCGGATGGGCATGGCTCGTAAACGATGGCGACAGGCTGCAGGTGATAAAGACGGGTAACGCAGATCTCCCGCTCACAAAA
GGAATGAAGCCGCTCTTAACGATCGATGTCTGGGAACACGCCTACTACCTTGATTACCAGAACCGGCGCCCGGATTATGT
CAATGCCGTGCTCGACAAGCTGATCAACTGGGGCTTTGCCGCTGACAACGATAAATAA

Upstream 100 bases:

>100_bases
CAGTATGGCAGGTATCAGGATGCGCTGATCTCTTGTCAAGGTTTCAGAGGAAAGCGCGGCACCGATCAAATTTTTATGTC
ACCACATGGGAGTGAAAACA

Downstream 100 bases:

>100_bases
TACCGCGACCTGCTGATGTGACGATACCAATTTCAGAACAAATCGAAATCATCAAGCGTGGTTGCAGCGAGCTTTTGCTG
GAAGACGAGCTGGAGCAGAA

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSNQNTGSAPYVLPPLPYADNALDPVISANTLGFHYGKHHKTYVDNLNKLVAGTDLADMSLEEIITSTAGKADKAGIFNN
AAQVWNHTFYWNSLSPKGGGEPPASLKQKIETAFGSVEVCKKELATAATTQFGSGWAWLVNDGDRLQVIKTGNADLPLTK
GMKPLLTIDVWEHAYYLDYQNRRPDYVNAVLDKLINWGFAADNDK

Sequences:

>Translated_205_residues
MSNQNTGSAPYVLPPLPYADNALDPVISANTLGFHYGKHHKTYVDNLNKLVAGTDLADMSLEEIITSTAGKADKAGIFNN
AAQVWNHTFYWNSLSPKGGGEPPASLKQKIETAFGSVEVCKKELATAATTQFGSGWAWLVNDGDRLQVIKTGNADLPLTK
GMKPLLTIDVWEHAYYLDYQNRRPDYVNAVLDKLINWGFAADNDK
>Mature_204_residues
SNQNTGSAPYVLPPLPYADNALDPVISANTLGFHYGKHHKTYVDNLNKLVAGTDLADMSLEEIITSTAGKADKAGIFNNA
AQVWNHTFYWNSLSPKGGGEPPASLKQKIETAFGSVEVCKKELATAATTQFGSGWAWLVNDGDRLQVIKTGNADLPLTKG
MKPLLTIDVWEHAYYLDYQNRRPDYVNAVLDKLINWGFAADNDK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=40.9090909090909, Blast_Score=138, Evalue=4e-33,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=40.9090909090909, Blast_Score=138, Evalue=4e-33,
Organism=Homo sapiens, GI67782309, Length=188, Percent_Identity=35.6382978723404, Blast_Score=98, Evalue=5e-21,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=54.1237113402062, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1790342, Length=201, Percent_Identity=44.7761194029851, Blast_Score=154, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI17506561, Length=194, Percent_Identity=41.7525773195876, Blast_Score=134, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=39.6907216494845, Blast_Score=125, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=195, Percent_Identity=38.4615384615385, Blast_Score=119, Evalue=5e-28,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=39.3939393939394, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22474; Mature: 22343

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQNTGSAPYVLPPLPYADNALDPVISANTLGFHYGKHHKTYVDNLNKLVAGTDLADMS
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCHHHHH
LEEIITSTAGKADKAGIFNNAAQVWNHTFYWNSLSPKGGGEPPASLKQKIETAFGSVEVC
HHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHH
KKELATAATTQFGSGWAWLVNDGDRLQVIKTGNADLPLTKGMKPLLTIDVWEHAYYLDYQ
HHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC
NRRPDYVNAVLDKLINWGFAADNDK
CCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SNQNTGSAPYVLPPLPYADNALDPVISANTLGFHYGKHHKTYVDNLNKLVAGTDLADMS
CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCHHHHH
LEEIITSTAGKADKAGIFNNAAQVWNHTFYWNSLSPKGGGEPPASLKQKIETAFGSVEVC
HHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHH
KKELATAATTQFGSGWAWLVNDGDRLQVIKTGNADLPLTKGMKPLLTIDVWEHAYYLDYQ
HHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECC
NRRPDYVNAVLDKLINWGFAADNDK
CCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]