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The map label for this gene is yjjQ [H]

Identifier: 82546718

GI number: 82546718

Start: 4480957

End: 4481682

Strand: Direct

Name: yjjQ [H]

Synonym: SBO_4425

Alternate gene names: 82546718

Gene position: 4480957-4481682 (Clockwise)

Preceding gene: 82546711

Following gene: 82546720

Centisome position: 99.14

GC content: 44.35

Gene sequence:

>726_bases
ATGTTGCCAGGATGCTGCAAAAATGGAATTGTTATCAGTAAAATACCTGTTATGCAAGCAGGGTTAAAAGAGGTCATGAG
GACTCACTTCCCTGAATATGAAATAATATCCAGCGCCTCTGCGGAGGACTTTACCTTATTACAATTACGTCGTTCCGGAT
TAGTCATTGCTGATTTAGCCGGTGAAAGTGAAGATCCACGTTCTGTTTGTGAACATTATTATTCTTTAATCTCACAATAT
CGGGAAATTCACTGGGTTTTCATGGTGTCACGCTCCTGGTATTCCCAGGCAGTAGAATTGCTCATGTGCCCTACGGCGAC
GTTATTGTCTGATGTTGAACCCATTGAGAATCTGGTCAAGACCGTACGTTCCGGCAATACGCACGCAGAGCGTATCAGCG
CCATGCTGACCTCTCCGGCAATGAATGAAACTCATGATTTTAGCTATCGCTCCGTCATTCTCACTCTTTCAGAGCGCAAG
GTACTGCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGTTTCGTTGCTTAAGAAAAGTAATAAAACTATCAGCGC
CCAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCGCAGGGTG
TAAGAGAACTTAACTTGCCTTCTGTTTATGGAGATGCCGCAGAATGGAACACAGCCGAATTAAGAAGAGAAATGTCGCAC
TCATAG

Upstream 100 bases:

>100_bases
ATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATGATTTTTAG
ACAGTGGATGTGGAGGAAAT

Downstream 100 bases:

>100_bases
AAAAATGCGTCATGAGCAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTAT
ACCAGTCAGGAGTCATTTCA

Product: regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDFTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQY
REIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGVRELNLPSVYGDAAEWNTAELRREMSH
S

Sequences:

>Translated_241_residues
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDFTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQY
REIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGVRELNLPSVYGDAAEWNTAELRREMSH
S
>Mature_241_residues
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDFTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQY
REIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERK
VLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGVRELNLPSVYGDAAEWNTAELRREMSH
S

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790827, Length=241, Percent_Identity=98.3402489626556, Blast_Score=491, Evalue=1e-140,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27136; Mature: 27136

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDFTLLQLRRSGLVIADLA
CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCEEEEECC
GESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERKVLRLLGKGWGINQIVSLLKK
HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHEEEHHHHHHHHHHHCCCCHHHHHHHHHH
SNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGVRELNLPSVYGDAAEWNTAELRREMSH
CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
S
C
>Mature Secondary Structure
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDFTLLQLRRSGLVIADLA
CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHCCEEEEECC
GESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVK
CCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TVRSGNTHAERISAMLTSPAMNETHDFSYRSVILTLSERKVLRLLGKGWGINQIVSLLKK
HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHEEEHHHHHHHHHHHCCCCHHHHHHHHHH
SNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGVRELNLPSVYGDAAEWNTAELRREMSH
CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]