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The map label for this gene is fimF [H]

Identifier: 82546664

GI number: 82546664

Start: 4421523

End: 4422053

Strand: Direct

Name: fimF [H]

Synonym: SBO_4368

Alternate gene names: 82546664

Gene position: 4421523-4422053 (Clockwise)

Preceding gene: 82546663

Following gene: 82546665

Centisome position: 97.83

GC content: 49.34

Gene sequence:

>531_bases
ATGAGAAACAAACCTTTTTATCTTCTGTGCGCTTTTTTGTGGCTGGCGGTAAGTCGCGTTTTGGCTGCGGATAGCACGAT
TACTATCCGCGGCTATGTCAGAGATAACGGCTGTAGTGTGGCCGCTGAATCAACCAATTTTACTGTTGATCTGATGGAAA
ACGCGGCGAAGCAATTTAACAACATTGGCGCAACGACTCCTGTCGTTCCATTTCGTATTTTGCTGTCACCCTGTGGTAAC
GCCGTTTCTGCCGTAAAGGTTGGGTTTACCGGCGTTGCAGATAGCCACAATGCCAACCTGCTTGCACTTGAAAATACGGT
GTCAGCGGCTTCGGGACTGGGAATACAGCTTCTGAATGAGCAGCAAAATCAGATACCCCTTAATGCTCCATCGTCCGCGA
TTTCGTGGACGACCCTGACGCCGGGTAAACCAAATACGTTGAATTTTTACGCCCGGCTAATGGCGACACAGGTGCCTGTC
ACTGCGGGGCATATCAATGCCACGGCTACCTTCACTCTTGAATATCAGTAA

Upstream 100 bases:

>100_bases
AGAGGAAAATGCTCACTGTATCGCCAATTATCAACTGCCACCAGAGAGTCAGCAGCAGTTATTAACCCAGCTATCAGCTG
AATGTCGTTAAGGGGGCGTG

Downstream 100 bases:

>100_bases
CTGGAGATGCTCATGAAATGGCGCAAACGTGGGTATTTATTGGCGGCAATATTGGCGCTCGCAAGTGCGACAATACAGGC
AGCCGATGTCACCATCACGG

Product: fimbrial morphology

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ

Sequences:

>Translated_176_residues
MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ
>Mature_176_residues
MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGN
AVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV
TAGHINATATFTLEYQ

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Involved in the integration of fimH in the fimbriae [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=176, Percent_Identity=98.2954545454545, Blast_Score=354, Evalue=2e-99,
Organism=Escherichia coli, GI1787781, Length=171, Percent_Identity=44.4444444444444, Blast_Score=147, Evalue=4e-37,
Organism=Escherichia coli, GI87081805, Length=158, Percent_Identity=37.3417721518987, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI87082421, Length=185, Percent_Identity=30.2702702702703, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI87081753, Length=154, Percent_Identity=33.1168831168831, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786746, Length=179, Percent_Identity=32.4022346368715, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI1787174, Length=187, Percent_Identity=27.807486631016, Blast_Score=60, Evalue=7e-11,
Organism=Escherichia coli, GI1790769, Length=154, Percent_Identity=34.4155844155844, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI1788674, Length=172, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18763; Mature: 18763

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN
CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHH
NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNE
CCCCCCCCHHHHHEECCCCCCCEEEEECEEECCCCCCCCEEEEECCCCCCCCCCEEEECC
QQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAESTNFTVDLMENAAKQFN
CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEECCCCEEEHHHHHHHHHHH
NIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLALENTVSAASGLGIQLLNE
CCCCCCCCHHHHHEECCCCCCCEEEEECEEECCCCCCCCEEEEECCCCCCCCCCEEEECC
QQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPVTAGHINATATFTLEYQ
CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2890081; 7610040; 9278503; 1970114 [H]