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The map label for this gene is yjhA [H]

Identifier: 82546658

GI number: 82546658

Start: 4412571

End: 4413296

Strand: Reverse

Name: yjhA [H]

Synonym: SBO_4361

Alternate gene names: 82546658

Gene position: 4413296-4412571 (Counterclockwise)

Preceding gene: 82546667

Following gene: 82546657

Centisome position: 97.64

GC content: 42.42

Gene sequence:

>726_bases
GTGAAATTTATGAAAAAGGCTAAAATACTTTCTGGCGTATTATTACTGTGCTTTTCGTCCCCATTAATTTCTCAGGCTGC
GACACTGGACGTACGTGGTGGATATCGTAGTGGAAGCCACGCCTATGAGACTCGACTCAAAGTCAGTGAGGGATGGCAAA
ATGGATGGTGGGCAAGCATGGAAAGTAATACCTGGAATACCATTCATGATAATAAAAAGGAAAATGCCGCACTCAATGAT
GTTCAGGTTGAAGTTAATTACGCGATTAAACTTGATGATCAATGGACGGTGCGTCCGGGAATGTTAACGCATTTTAGCAG
CAACGGCACACGCTACGGACCCTACGTAAAACTGTCCTGGGACGCGACAAAAGATCTTAATTTTGGCATTCGCTATCGTT
ACGACTGGAAAGCTTACCGACAACAAGACTTATCCAGTGATATGTCTCGTGATAACGTTCATCGTTGGGATGGATATGTC
ACTTACCATATTAATAGTGATTTCACCTTCGCATGGCAAACGACGCTATACAGCAAACAGAACGATTATCGCTATGCAAA
CCATAAGAAATGGGCGACGGAAAATGCATTTGTTCTACAATACCATATGACGCCCGATATTACGCCATACATAGAATATG
ACTACCTTGACCGTCAGGGTGTTTACAACGGCAGAGATAATTTATCGGAAAACAGTTATCGCATTGGTGTGTCATTTAAA
CTGTAG

Upstream 100 bases:

>100_bases
CGGTTGCCAAAGACACTATAAGCCTGGCAAAAAATATTACACAACATAAATGCTAATTGTTTATGCGGGCTTTGTATTGC
TTTCTGTATCCTACAAATGA

Downstream 100 bases:

>100_bases
TAGACAGGAGACAGTCACAATGAATAAAACAATAACGGCGCTTGCTATCATGATGGCTTCATTTGCCGCAAACGCGTCTG
TATTACCGGAAACTCCTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Porin nanC [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALND
VQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYV
TYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFK
L

Sequences:

>Translated_241_residues
MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALND
VQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYV
TYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFK
L
>Mature_241_residues
MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTIHDNKKENAALND
VQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYV
TYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFK
L

Specific function: Outer membrane channel protein allowing the entry of N- acetylneuraminic acid (Neu5Ac or sialic acid) into the bacteria. NanC proteins form high-conductance channels which are open at low membrane potentials and which have a weak anion selectivity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oligogalacturonate-specific porin kdgM (TC 1.B.35) family. NanC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082420, Length=238, Percent_Identity=99.5798319327731, Blast_Score=494, Evalue=1e-141,
Organism=Escherichia coli, GI1790307, Length=235, Percent_Identity=24.6808510638298, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009331
- InterPro:   IPR001702 [H]

Pfam domain/function: PF06178 KdgM [H]

EC number: NA

Molecular weight: Translated: 28325; Mature: 28325

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASM
CCHHHHHHHHHHHHHHHHCCCHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCEEEEE
ESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSW
CCCCCCCCCCCCCCCCEECEEEEEEEEEEEECCCEEECCCEEEEECCCCCEECCEEEEEE
DATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQ
CCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEECCCEEEEEECCCEEEEEEEEEECCC
NDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFK
CCCEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE
L
C
>Mature Secondary Structure
MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYETRLKVSEGWQNGWWASM
CCHHHHHHHHHHHHHHHHCCCHHCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCEEEEE
ESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSW
CCCCCCCCCCCCCCCCEECEEEEEEEEEEEECCCEEECCCEEEEECCCCCEECCEEEEEE
DATKDLNFGIRYRYDWKAYRQQDLSSDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQ
CCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEECCCEEEEEECCCEEEEEEEEEECCC
NDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFK
CCCEECCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]