Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

Click here to switch to the map view.

The map label for this gene is yjhT [H]

Identifier: 82546657

GI number: 82546657

Start: 4411445

End: 4412659

Strand: Reverse

Name: yjhT [H]

Synonym: SBO_4360

Alternate gene names: 82546657

Gene position: 4412659-4411445 (Counterclockwise)

Preceding gene: 82546658

Following gene: 82546656

Centisome position: 97.63

GC content: 44.12

Gene sequence:

>1215_bases
ATGACTACCTTGACCGTCAGGGTGTTTACAACGGCAGAGATAATTTATCGGAAAACAGTTATCGCATTGGTGTGTCATTT
AAACTGTAGTAGACAGGAGACAGTCACAATGAATAAAACAATAACGGCGCTTGCTATCATGATGGCTTCATTTGCCGCAA
ACGCGTCTGTATTACCGGAAACTCCTGTGCCATTTAAAAGTGGTACCGGAGCAATTGATAACGACACTGTCTACATTGGT
TTAGGTAGCGCAGGTACGGCATGGTACAAGCTGGATACACAGGCCAAAGATAAAAAATGGACAGCGTTAGCTGCATTCCC
TGGTGGACCAAGAGATCAAGCAACCTCTGCATTTATTGATGGCAATCTGTATGTGTTTGGCGGCATTGGCAAAAACAGAG
AGGGCTTGACTCAGGTATTTAATGACGTACACAAATACAACCCCAAAACCAATAGCTGGGTTAAATTGATGTCGCACGCA
CCGATGGGCATGGCGGGTCATGTGACTTTTGTACACAACGGCAAGGCTTATGTTACTGGCGGTGTTAACCAGAATATCTT
CAATGGCTATTTTGAAGATCTCAACGAGGCTGGAAAAGATTCAACCGCTGTAGATAAAATCAATGCCTACTATTTTGACA
AAAAAGCAGAAGATTATTTCTTCAATAAGTTTCTGTTGTCTTTTGATCCCTCAACACAGCAATGGAGTTACGCTGGCGAA
TCGCCCTGGTACGGAACGGCTGGTGCGGCGGTTGTGAATAAAGGTGATAAAACCTGGCTTATTAATGGCGAAGCCAAACC
CGGATTGCGAACGGATGCCGTATTTGAACTTGATTTCACCGGTAATAATTTAAAATGGAATAAGCTTGCTCCCGTCTCAT
CACCAGATGGCGTCGCTGGCGGTTTTGCGGGGATAAGCAATGATTCTCTTATATTTGCCGGAGGGGCCGGATTCAAAGGT
TCACGAGAAAATTACCAGCACGGAAAGAACTATGCGCATGAAGGCCTGAAAAAATCATATAGCACTGATATTCATCTTTG
GCATAACGGGAAATGGGATAAATCGGGTGAATTATCGCAAGGTCGGGCCTACGGAGTATCATTGCCCTGGAATAATAGTC
TATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCTCTGTGAAGGATAATAAAGTC
ACAGTACAAAACTAA

Upstream 100 bases:

>100_bases
CAGAACGATTATCGCTATGCAAACCATAAGAAATGGGCGACGGAAAATGCATTTGTTCTACAATACCATATGACGCCCGA
TATTACGCCATACATAGAAT

Downstream 100 bases:

>100_bases
CGCTTCAGGGCCCCAGTAAAGGGGCCCTGCTATCAATTTATCATTTCAATTACGCGAAAATTATATGGACGCAATAATAT
CGCCCGATTATTACTATGTT

Product: N-acetylneuraminic acid mutarotase

Products: NA

Alternate protein names: N-acetylneuraminate mutarotase 2; Neu5Ac mutarotase 2; Sialic acid epimerase 2 [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHA
PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE
SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG
SRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKV
TVQN

Sequences:

>Translated_404_residues
MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG
LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHA
PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE
SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG
SRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKV
TVQN
>Mature_403_residues
TTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGL
GSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAP
MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES
PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS
RENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVT
VQN

Specific function: Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, whic

COG id: COG3055

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 Kelch repeats [H]

Homologues:

Organism=Escherichia coli, GI87082419, Length=368, Percent_Identity=98.6413043478261, Blast_Score=743, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015915
- InterPro:   IPR006652
- InterPro:   IPR019936 [H]

Pfam domain/function: PF01344 Kelch_1 [H]

EC number: NA

Molecular weight: Translated: 43757; Mature: 43626

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPE
CCEEEEEEEEHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC
TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID
CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEC
GNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG
CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCEEEEEC
GVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE
CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCHHEEEEEEEEECCCCCCCCCCCC
SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG
CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCCC
GFAGISNDSLIFAGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ
CCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN
CCEEEEECCCCCEEEEEECCCCCCCEEECEEEEEEECCEEEECC
>Mature Secondary Structure 
TTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPE
CEEEEEEEEHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC
TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID
CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEC
GNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG
CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCEEEEEC
GVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE
CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCHHEEEEEEEEECCCCCCCCCCCC
SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG
CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCCC
GFAGISNDSLIFAGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ
CCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN
CCEEEEECCCCCEEEEEECCCCCCCEEECEEEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]