| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yjhT [H]
Identifier: 82546657
GI number: 82546657
Start: 4411445
End: 4412659
Strand: Reverse
Name: yjhT [H]
Synonym: SBO_4360
Alternate gene names: 82546657
Gene position: 4412659-4411445 (Counterclockwise)
Preceding gene: 82546658
Following gene: 82546656
Centisome position: 97.63
GC content: 44.12
Gene sequence:
>1215_bases ATGACTACCTTGACCGTCAGGGTGTTTACAACGGCAGAGATAATTTATCGGAAAACAGTTATCGCATTGGTGTGTCATTT AAACTGTAGTAGACAGGAGACAGTCACAATGAATAAAACAATAACGGCGCTTGCTATCATGATGGCTTCATTTGCCGCAA ACGCGTCTGTATTACCGGAAACTCCTGTGCCATTTAAAAGTGGTACCGGAGCAATTGATAACGACACTGTCTACATTGGT TTAGGTAGCGCAGGTACGGCATGGTACAAGCTGGATACACAGGCCAAAGATAAAAAATGGACAGCGTTAGCTGCATTCCC TGGTGGACCAAGAGATCAAGCAACCTCTGCATTTATTGATGGCAATCTGTATGTGTTTGGCGGCATTGGCAAAAACAGAG AGGGCTTGACTCAGGTATTTAATGACGTACACAAATACAACCCCAAAACCAATAGCTGGGTTAAATTGATGTCGCACGCA CCGATGGGCATGGCGGGTCATGTGACTTTTGTACACAACGGCAAGGCTTATGTTACTGGCGGTGTTAACCAGAATATCTT CAATGGCTATTTTGAAGATCTCAACGAGGCTGGAAAAGATTCAACCGCTGTAGATAAAATCAATGCCTACTATTTTGACA AAAAAGCAGAAGATTATTTCTTCAATAAGTTTCTGTTGTCTTTTGATCCCTCAACACAGCAATGGAGTTACGCTGGCGAA TCGCCCTGGTACGGAACGGCTGGTGCGGCGGTTGTGAATAAAGGTGATAAAACCTGGCTTATTAATGGCGAAGCCAAACC CGGATTGCGAACGGATGCCGTATTTGAACTTGATTTCACCGGTAATAATTTAAAATGGAATAAGCTTGCTCCCGTCTCAT CACCAGATGGCGTCGCTGGCGGTTTTGCGGGGATAAGCAATGATTCTCTTATATTTGCCGGAGGGGCCGGATTCAAAGGT TCACGAGAAAATTACCAGCACGGAAAGAACTATGCGCATGAAGGCCTGAAAAAATCATATAGCACTGATATTCATCTTTG GCATAACGGGAAATGGGATAAATCGGGTGAATTATCGCAAGGTCGGGCCTACGGAGTATCATTGCCCTGGAATAATAGTC TATTGATTATTGGCGGTGAAACTGCAGGCGGCAAAGCGGTGACGGATTCAGTTTTGATCTCTGTGAAGGATAATAAAGTC ACAGTACAAAACTAA
Upstream 100 bases:
>100_bases CAGAACGATTATCGCTATGCAAACCATAAGAAATGGGCGACGGAAAATGCATTTGTTCTACAATACCATATGACGCCCGA TATTACGCCATACATAGAAT
Downstream 100 bases:
>100_bases CGCTTCAGGGCCCCAGTAAAGGGGCCCTGCTATCAATTTATCATTTCAATTACGCGAAAATTATATGGACGCAATAATAT CGCCCGATTATTACTATGTT
Product: N-acetylneuraminic acid mutarotase
Products: NA
Alternate protein names: N-acetylneuraminate mutarotase 2; Neu5Ac mutarotase 2; Sialic acid epimerase 2 [H]
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHA PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG SRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKV TVQN
Sequences:
>Translated_404_residues MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIG LGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHA PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG SRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKV TVQN >Mature_403_residues TTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGL GSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAP MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS RENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVT VQN
Specific function: Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, whic
COG id: COG3055
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 7 Kelch repeats [H]
Homologues:
Organism=Escherichia coli, GI87082419, Length=368, Percent_Identity=98.6413043478261, Blast_Score=743, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015915 - InterPro: IPR006652 - InterPro: IPR019936 [H]
Pfam domain/function: PF01344 Kelch_1 [H]
EC number: NA
Molecular weight: Translated: 43757; Mature: 43626
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPE CCEEEEEEEEHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEC GNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCEEEEEC GVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCHHEEEEEEEEECCCCCCCCCCCC SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCCC GFAGISNDSLIFAGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ CCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN CCEEEEECCCCCEEEEEECCCCCCCEEECEEEEEEECCEEEECC >Mature Secondary Structure TTLTVRVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTITALAIMMASFAANASVLPE CEEEEEEEEHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFID CCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEC GNLYVFGGIGKNREGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTG CCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEECCEEEEEC GVNQNIFNGYFEDLNEAGKDSTAVDKINAYYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE CCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCHHEEEEEEEEECCCCCCCCCCCC SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG CCCCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCCC GFAGISNDSLIFAGGAGFKGSRENYQHGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ CCCCCCCCCEEEECCCCCCCCCCHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLISVKDNKVTVQN CCEEEEECCCCCEEEEEECCCCCCCEEECEEEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]