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The map label for this gene is ytfT [H]

Identifier: 82546523

GI number: 82546523

Start: 4268788

End: 4269813

Strand: Reverse

Name: ytfT [H]

Synonym: SBO_4216

Alternate gene names: 82546523

Gene position: 4269813-4268788 (Counterclockwise)

Preceding gene: 82546524

Following gene: 82546522

Centisome position: 94.47

GC content: 57.12

Gene sequence:

>1026_bases
GTGATGCCTCAATCTCTTCCGGACACCACTACGCCAAAAAGGCGCTTTCGCTGGCCGACGGGGATGCCGCAGCTGGTAGC
ACTATTGCTGGTGCTGCTGGTCGACAGCCTGGTAGCCCCGCATTTCTGGCAGGTAGTGCTTCAGGATGGGCGTTTGTTCG
GTAGCCCCATAGACATTCTTAACCGTGCAGCCCCCGTTGCGTTACTGGCGATTGGTATGACGCTGGTGATCGCCACCGGT
GGGATTGATCTCTCCGTAGGGGCGGTGATGGCTATCGCCGGAGCCACAACGGCTGCGATGACGGTCGCGGAAGTCAGCCT
GCCGATTGTTTTGTTAAGCGCCCTAGGCACCGGCATCCTGGCGGGATTGTGGAACGGCATACTGGTAGCGATCCTCAAAA
TTCAGCCATTTGTCGCCACCCTGATCCTGATGGTCGCCGGGCGCGACGTGGCGCAACTGATCACCTCCGGACAGATCGTC
ACGTTTAACTCGCCGGATCTCTCATGGTTTGGCAGTGGATCGCTGTTGTTCCTGCCAACGCCAGTCATTATTGCGGTACT
GACGCTTCTCCTGTTCTGGCTGTTGACCCGCAAAACGGCACTGGGGATGTTTATCGAAGCCGTTGGTATCAACATTCGGG
CGGCAAAAAATGCCGGGGTAAACACGCGGATCATCGTCATGCTCACTTATGTGTTGAGCGGGCTGTGTGCGGCGATTGCG
GGCATTATCGTGGCGGCGGATATTCGCGGTGCCGATGCCAACAACGCCGGATTATGGCTGGAGCTGGACGCCATTCTCGC
GGTGGTGATTGGCGGCGGATCGCTGATGGGCGGGCGCTTTAACCTGCTGCTCTCGGTAGTGGGGGCGCTGATTATTCAGG
GGATGAACACCGGAATTTTGCTTTCGGGCTTTCCACCGGAGATGAACCAGGTGGTGAAAGCGGTGGTGGTGCTTTGCGTG
CTGATTGTCCAGTCGCAACGCTTTATCAGTCTGATTAAAGGAGTACGTAGCCGTGATAAAACGTAA

Upstream 100 bases:

>100_bases
GTGATCATCATGCGCGATCGCAAACAGGTGGCGGAGATCCGGCTGGCAGAGCTTTCCGTTCCGGCTATCATGAACGCCAT
TGCGGCGTAAGGAGAACAGT

Downstream 100 bases:

>100_bases
TTTGCCACTGATGATCACCATCGGCGTCTTTGTGCTGGGCTATTTCTACTGCCTGACGCAGTTTCCCGGTTTTGCTTCCA
CAAGAGTGATCTGCAATATC

Product: transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATTAAMTVAEVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRDVAQLITSGQIV
TFNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCV
LIVQSQRFISLIKGVRSRDKT

Sequences:

>Translated_341_residues
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATTAAMTVAEVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRDVAQLITSGQIV
TFNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCV
LIVQSQRFISLIKGVRSRDKT
>Mature_341_residues
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATG
GIDLSVGAVMAIAGATTAAMTVAEVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRDVAQLITSGQIV
TFNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIA
GIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCV
LIVQSQRFISLIKGVRSRDKT

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693214, Length=341, Percent_Identity=98.533724340176, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1790191, Length=326, Percent_Identity=37.4233128834356, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1788896, Length=336, Percent_Identity=33.9285714285714, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790524, Length=244, Percent_Identity=32.3770491803279, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=333, Percent_Identity=32.1321321321321, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787793, Length=276, Percent_Identity=34.7826086956522, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789992, Length=330, Percent_Identity=29.6969696969697, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082395, Length=252, Percent_Identity=34.5238095238095, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788471, Length=281, Percent_Identity=29.5373665480427, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787794, Length=277, Percent_Identity=27.4368231046931, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35758; Mature: 35758

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDIL
CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
NRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAEVSLPIVLLSALGTGIL
HHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLWNGILVAILKIQPFVATLILMVAGRDVAQLITSGQIVTFNSPDLSWFGSGSLLFLPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCEECCCCEEEECH
PVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
GIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGIL
HHHHHHCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
LSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
EECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQVVLQDGRLFGSPIDIL
CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
NRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVAEVSLPIVLLSALGTGIL
HHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLWNGILVAILKIQPFVATLILMVAGRDVAQLITSGQIVTFNSPDLSWFGSGSLLFLPT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCCCCEECCCCEEEECH
PVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAGVNTRIIVMLTYVLSGLCAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
GIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMGGRFNLLLSVVGALIIQGMNTGIL
HHHHHHCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE
LSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGVRSRDKT
EECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]