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The map label for this gene is yjfF [H]

Identifier: 82546522

GI number: 82546522

Start: 4267806

End: 4268777

Strand: Reverse

Name: yjfF [H]

Synonym: SBO_4215

Alternate gene names: 82546522

Gene position: 4268777-4267806 (Counterclockwise)

Preceding gene: 82546523

Following gene: 82546520

Centisome position: 94.45

GC content: 53.4

Gene sequence:

>972_bases
ATGATCACCATCGGCGTCTTTGTGCTGGGCTATTTCTACTGCCTGACGCAGTTTCCCGGTTTTGCTTCCACAAGAGTGAT
CTGCAATATCCTGACCGATAACGCTTTTCTGGGGATTATTGCCGTTGGTATGACCTTTGTGATCCTCTCTGGCGGTATCG
ATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGCGTGTTTCTGGCAAAAGTGGTTGGCGATTTCGGCCTCTCGCCGCTG
CTGGCGTTTCCGCTAGTGCTGGTGATGGGCTGTGCCTTCGGCGCATTTATGGGGCTTCTGATCGACGCCCTGAAGATCCC
GGCATTTATCATTACGCTTGCGGGGATGTTCTTTTTGCGCGGCGTCAGCTATCTCGTTTCGGAAGAGTCGATTCCGATAA
ACCATCCCATTTATGACACGCTCTCAAGCCTTGCGTGGAAAATCCCCGGCGGCGGTCGCCTTAGTGCGATGGGGCTGTTG
ATGCTGGCGGTGGTGGTTATCGGTATTTTCCTTGCGCATCGTACCCGTTTTGGCAATCAGGTGTACGCTATTGGCGGCAA
CGCGACGTCGGCGAACCTGATGGGGATTTCTACTCGCAGCACTACTATTCGCATTTATATGCTCTCCACCGGACTGGCAA
CACTGGCGGGGATTGTCTTCTCGATTTATACCCAGGCCGGATATGCACTGGCGGGCGTAGGTGTGGAACTGGACGCCATC
GCGTCGGTGGTGATTGGCGGTACGTTGTTAAGTGGTGGCGTCGGGACGGTGCTTGGGACGCTTTTTGGCGTGGCAATTCA
GGGACTGATCCAGACTTACATCAACTTTGACGGCACGCTGAGTTCCTGGTGGACGAAAATCGCCATCGGTATTTTGTTGT
TTATTTTTATAGCATTACAGCGTGGGTTAACGGTGCTGTGGGAGAATCGTCAGAGTTCGCCAGTGACAAGAGTCAACATT
GCGCAGCGATAA

Upstream 100 bases:

>100_bases
AAAGCGGTGGTGGTGCTTTGCGTGCTGATTGTCCAGTCGCAACGCTTTATCAGTCTGATTAAAGGAGTACGTAGCCGTGA
TAAAACGTAATTTGCCACTG

Downstream 100 bases:

>100_bases
AAATGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCAT
ATGGTCGTTGCCGACAAAGA

Product: inner membrane ABC transporter permease protein YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPL
LAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLL
MLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI
ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNI
AQR

Sequences:

>Translated_323_residues
MITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPL
LAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLL
MLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI
ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNI
AQR
>Mature_323_residues
MITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPL
LAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLL
MLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI
ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNI
AQR

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=323, Percent_Identity=99.0712074303406, Blast_Score=623, Evalue=1e-180,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=36.8770764119601, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=279, Percent_Identity=36.9175627240143, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1789992, Length=315, Percent_Identity=32.3809523809524, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI145693152, Length=272, Percent_Identity=31.6176470588235, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=282, Percent_Identity=31.2056737588652, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=322, Percent_Identity=30.1242236024845, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=34.5238095238095, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34060; Mature: 34060

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSV
CEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHH
IAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQ
HHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
VYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI
EEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHH
ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RGLTVLWENRQSSPVTRVNIAQR
CCCEEEECCCCCCCCEEEECCCC
>Mature Secondary Structure
MITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSV
CEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHH
IAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQ
HHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE
VYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI
EEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHH
ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RGLTVLWENRQSSPVTRVNIAQR
CCCEEEECCCCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]