| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhiL [H]
Identifier: 82545852
GI number: 82545852
Start: 3477052
End: 3478065
Strand: Reverse
Name: yhiL [H]
Synonym: SBO_3486
Alternate gene names: 82545852
Gene position: 3478065-3477052 (Counterclockwise)
Preceding gene: 82545853
Following gene: 82545851
Centisome position: 76.95
GC content: 34.32
Gene sequence:
>1014_bases GTGTTTTCAAAAATAGATTTTTATAAACAGTGTGGTGTGATTAACCCACAAAATCCCAACACGGCTTATTTTGGCGATAC AGATGGAAGAGTTGGCGCTGTACTTTATGCATTGCTCGTTTCAGGACATATAGGTATCAGGGAAAAGGGGTGGAGTTTAT TATGTGAATTATTAAAACACGAAGACATGGCTTCATTCGCATATGAAAATAAAAAATTGGAAAAACTCTTTACTTTATTA GATACGAGAGACATGATCTTGAATAAGTTGCATCAACATGTTTTTTTAAAAGGCGATGCGATTACCCCTTGTATCTTTCT TGGGGATCATACAGGCGATAGATTCAGTACTATTTTTGGTGATAAATATATCCTTACTTTGCTAAATTCTATGCGGAATA TGGAGAGTAATAAAGATAGTCGTATAAATAAAAATGACGTCGTTCTGGCTGGAAATTATGAAATCAATTTCAATGGTAAC TATACTGCACGACTAGCAAATCATAAACTCTCTGCCGGTGATACGTATAACTTAATTAAAACGCTCGATGTTTGTAATTA TGACTCAGAAACGAAAGTTTTAAGCAGTCATCACGGAATAATAAGAAATGAAGAAAATGAATGTTATTGTCTAGGTGCTT TGCAGGTTCCATTTAATCAGATGAAAGACCCAATTGATCCTGAGGAATTAGCAAATATATTTAATAAAAAACATAAACAA CACATGGATGATCGTTTTATCCATCTAATTAGAAGCAATGCTATAGCATCCACACCTGTATATGACAATTATTTTAATAA CACTACTGCTTTCAGACCAAAACCTGAAGATATCTTCAAATGTGGACAGACGCTCAAAAAAACTAAACAGAAATATGGCC ATTATGGATTAGGGGTAGATCAGCATCAAAAAATTGATAATTATACCATGGGGCTAAATTCCTGGAAGATAGCTCCTAAC GAACGTGGTGATAAAAAAGGTGTCCCAGGGCTTAGTTGTTTTCAACCACATTAA
Upstream 100 bases:
>100_bases TTTCTTTACTCTTCTTAGCGGTAATTTTAAAGCTGACTAGCGTTGGGATGTCTCTAAAGAGACGTTTCCTAAGGATAAGT TTGCTAGCTATGTTAATTCT
Downstream 100 bases:
>100_bases AACTCCATGAGTGCTGTGGTATATCTTTTTAATCCTGCCAGTATTTCATAGGTTTTCTTAATCGATTGTAGAGACATGTT CTGATGACGCCTCTACAATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MFSKIDFYKQCGVINPQNPNTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEDMASFAYENKKLEKLFTLL DTRDMILNKLHQHVFLKGDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMESNKDSRINKNDVVLAGNYEINFNGN YTARLANHKLSAGDTYNLIKTLDVCNYDSETKVLSSHHGIIRNEENECYCLGALQVPFNQMKDPIDPEELANIFNKKHKQ HMDDRFIHLIRSNAIASTPVYDNYFNNTTAFRPKPEDIFKCGQTLKKTKQKYGHYGLGVDQHQKIDNYTMGLNSWKIAPN ERGDKKGVPGLSCFQPH
Sequences:
>Translated_337_residues MFSKIDFYKQCGVINPQNPNTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEDMASFAYENKKLEKLFTLL DTRDMILNKLHQHVFLKGDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMESNKDSRINKNDVVLAGNYEINFNGN YTARLANHKLSAGDTYNLIKTLDVCNYDSETKVLSSHHGIIRNEENECYCLGALQVPFNQMKDPIDPEELANIFNKKHKQ HMDDRFIHLIRSNAIASTPVYDNYFNNTTAFRPKPEDIFKCGQTLKKTKQKYGHYGLGVDQHQKIDNYTMGLNSWKIAPN ERGDKKGVPGLSCFQPH >Mature_337_residues MFSKIDFYKQCGVINPQNPNTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKHEDMASFAYENKKLEKLFTLL DTRDMILNKLHQHVFLKGDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMESNKDSRINKNDVVLAGNYEINFNGN YTARLANHKLSAGDTYNLIKTLDVCNYDSETKVLSSHHGIIRNEENECYCLGALQVPFNQMKDPIDPEELANIFNKKHKQ HMDDRFIHLIRSNAIASTPVYDNYFNNTTAFRPKPEDIFKCGQTLKKTKQKYGHYGLGVDQHQKIDNYTMGLNSWKIAPN ERGDKKGVPGLSCFQPH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789902, Length=321, Percent_Identity=36.7601246105919, Blast_Score=204, Evalue=6e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38428; Mature: 38428
Theoretical pI: Translated: 8.03; Mature: 8.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKIDFYKQCGVINPQNPNTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKH CCCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC EDMASFAYENKKLEKLFTLLDTRDMILNKLHQHVFLKGDAITPCIFLGDHTGDRFSTIFG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCHHHHHHC DKYILTLLNSMRNMESNKDSRINKNDVVLAGNYEINFNGNYTARLANHKLSAGDTYNLIK CHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEECCCEEEEEECCCCCCCCHHHHHH TLDVCNYDSETKVLSSHHGIIRNEENECYCLGALQVPFNQMKDPIDPEELANIFNKKHKQ HHHHCCCCCHHHHHHHCCCCEECCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHH HMDDRFIHLIRSNAIASTPVYDNYFNNTTAFRPKPEDIFKCGQTLKKTKQKYGHYGLGVD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC QHQKIDNYTMGLNSWKIAPNERGDKKGVPGLSCFQPH HHHCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MFSKIDFYKQCGVINPQNPNTAYFGDTDGRVGAVLYALLVSGHIGIREKGWSLLCELLKH CCCCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC EDMASFAYENKKLEKLFTLLDTRDMILNKLHQHVFLKGDAITPCIFLGDHTGDRFSTIFG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCCHHHHHHC DKYILTLLNSMRNMESNKDSRINKNDVVLAGNYEINFNGNYTARLANHKLSAGDTYNLIK CHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEECCCEEEEEECCCCCCCCHHHHHH TLDVCNYDSETKVLSSHHGIIRNEENECYCLGALQVPFNQMKDPIDPEELANIFNKKHKQ HHHHCCCCCHHHHHHHCCCCEECCCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHHH HMDDRFIHLIRSNAIASTPVYDNYFNNTTAFRPKPEDIFKCGQTLKKTKQKYGHYGLGVD HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC QHQKIDNYTMGLNSWKIAPNERGDKKGVPGLSCFQPH HHHCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]