| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhiJ [H]
Identifier: 82545851
GI number: 82545851
Start: 3475777
End: 3476790
Strand: Reverse
Name: yhiJ [H]
Synonym: SBO_3485
Alternate gene names: 82545851
Gene position: 3476790-3475777 (Counterclockwise)
Preceding gene: 82545852
Following gene: 82545849
Centisome position: 76.92
GC content: 36.09
Gene sequence:
>1014_bases ATGAAAATTGGAACTGTGGCAGGCACTAACGACAGTACAACGACAATCGCAACAAATGATATGGTGCAAGAGCATGTTAC CAACTTCACTAAAGAACTGTTTGGGTATATTGCAAATGGTATAGGTGATGATATATCAAGTATTGCCAGGACAATGCTCG GTGAGGTTGTGGAAAAAATAGATGATTGGCAAATAGAACGGTTCCAACAATCTATTCAAGATGACAAAATTTCATTTACC ATACAAACGGATCATTCAGAAAAATATAGTATGCTATCGGGCATGCGTGCTCATATTCTACGTAGGGATAATAATTATCA GTTTATTGTGACAATTAATAGTAAAAATTACGGTTGCTCTCTTGATAATACTGATGTTAATTGGTGCAGTGTTGTTTATT TACTTAATAATATGACAGTAAATGATAATGCTAATGATGTTGCAGTTACTGAGTCGTACAAACCCATCTGGAACTGGAAA ATATCGCAATACAATGTATTTGATATTAAATTCGAAACAATTATAAACCCCCAGTTCGCTGACAGAATCTATTTCTCCAA TTGTTCACCTGTTGATCCCACAAGTACCAGGCCGACCTATTTTGGGGATACCGATGGTTCAGTTGGTGCAGTTTTGTACG CGCTTTTTGCTACGGGATATTTGGGAATCATGACTGAAGGAGAAAATTTCCTTTGCCAGTTGCTTACTATAGAAGATGAA GTTCTCAACGTATTGCTAAGGGAAAACTTTAATGAGCAACTTGACACTAATATTAATACAATAATCAGTAACCTGAACAG AAGAGATAATGTTTTAGAAAGTCTTCAGCCTTATTTAGTTATTAATAAAGACGCAGTCACGCCATGTACGTTTCTGGGCG ACCAAACCGGCGATCGATTTAGTAATATCTGTGGCGATCAATTTATCATCGATTTGTTAAAACGCATAATGAGTATCAAT GAAAATGTTCATGTATTAGCTGGAAATCATGAAACGAATTGCAATGGTAACTAG
Upstream 100 bases:
>100_bases TTGTGCAAAATATAATTATTTTTCCATCGAACATGAGGTGTATGTCATAAGATAAAATGTTAACTATGTATTCCTCGCGG TGAATAATATGAGGTAAAAG
Downstream 100 bases:
>100_bases GTAATGCTGCCAACTTACTGATTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCC TTCCTGCTCCGCTACTGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFT IQTDHSEKYSMLSGMRAHILRRDNNYQFIVTINSKNYGCSLDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWK ISQYNVFDIKFETIINPQFADRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFATGYLGIMTEGENFLCQLLTIEDE VLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSIN ENVHVLAGNHETNCNGN
Sequences:
>Translated_337_residues MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFT IQTDHSEKYSMLSGMRAHILRRDNNYQFIVTINSKNYGCSLDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWK ISQYNVFDIKFETIINPQFADRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFATGYLGIMTEGENFLCQLLTIEDE VLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSIN ENVHVLAGNHETNCNGN >Mature_337_residues MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFT IQTDHSEKYSMLSGMRAHILRRDNNYQFIVTINSKNYGCSLDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWK ISQYNVFDIKFETIINPQFADRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFATGYLGIMTEGENFLCQLLTIEDE VLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQPYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSIN ENVHVLAGNHETNCNGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789902, Length=337, Percent_Identity=94.9554896142433, Blast_Score=664, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38087; Mature: 38087
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKI CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRDNNYQFIVTINSKNYGCS CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHEEECCCEEEEEEECCCCCCCC LDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVFDIKFETIINPQFA CCCCCCHHHHHEEHHHCEEECCCCCCEEEECCCCCCCCEEECCEEEEEEEEEEECCCHHH DRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFATGYLGIMTEGENFLCQLLTIEDE CEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHH VLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQPYLVINKDAVTPCTFLGDQTGDRF HHHHHHHHCCCHHHHCCHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCHHH SNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGN HHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC >Mature Secondary Structure MKIGTVAGTNDSTTTIATNDMVQEHVTNFTKELFGYIANGIGDDISSIARTMLGEVVEKI CCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DDWQIERFQQSIQDDKISFTIQTDHSEKYSMLSGMRAHILRRDNNYQFIVTINSKNYGCS CCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHEEECCCEEEEEEECCCCCCCC LDNTDVNWCSVVYLLNNMTVNDNANDVAVTESYKPIWNWKISQYNVFDIKFETIINPQFA CCCCCCHHHHHEEHHHCEEECCCCCCEEEECCCCCCCCEEECCEEEEEEEEEEECCCHHH DRIYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFATGYLGIMTEGENFLCQLLTIEDE CEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHH VLNVLLRENFNEQLDTNINTIISNLNRRDNVLESLQPYLVINKDAVTPCTFLGDQTGDRF HHHHHHHHCCCHHHHCCHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCHHH SNICGDQFIIDLLKRIMSINENVHVLAGNHETNCNGN HHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]