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The map label for this gene is ygcL [C]

Identifier: 82545167

GI number: 82545167

Start: 2769621

End: 2771183

Strand: Direct

Name: ygcL [C]

Synonym: SBO_2760

Alternate gene names: 82545167

Gene position: 2769621-2771183 (Clockwise)

Preceding gene: 82545166

Following gene: 82545168

Centisome position: 61.28

GC content: 46.26

Gene sequence:

>1563_bases
ATGAACTCGTTTTCACTTCTGACAACCCCGTGGTTGCCCGTTCGTTTTAAAGACGGAACGACAGGCAAACTGGCACCAGT
CGATCTGGCTGATGAAAATGTTGTCGATATCGCTGCGCCGCGGGCAGATCTCCAGGGGGCGGCCTGGCAGTTTTTGCTGG
GGCTACTACAAACCAGCTTCGCGCCAAAAGATCAACGTAGTTGGGATGATATCTGGGAAGACGGACTGGAAGCTGAAAAG
CTAAGGGAAGCATTGCTGTCTTTAGAACATGCTTTTCAGTTTGGGCCAGATTCCCCTTCATTTATGCAGGATTTTGATGA
ATTAAAAGTTAAGGCAACTTTTATTGCTTCGCTTCTTCCTGACGCACCAGGAAAACAAACAAAAGAACGAAATACAGACC
ATTTTATTAAGCGAGACACAACTCAGCATCTGTGCCTGCATTGTGTGCCTTTAGCGCTTTTTTCAATCCAGTTGAATGCA
CCTATAGGTGGACGCGGTTACTATCCTGGGCTACGTGGCGGAGGGCCTCTGACGACACTTATAGAATTGCTGGAGTATCA
GGGCAATCAACAAACCCCTTTGTGGCGAAAGCTGTGGCTAAACGTAATGCCGCAAGATGAAGCCGATTTACCTTTACCAA
AAACCTTTGATGACCTGGTCTTTCCTTGGCTTGCACCGACGCGTACCAGCGAACTGGACGGTGCTGTGGTAACGGATGAA
CAAGTCAATAAACTTCAGGCCTACTGGGGAATGCCACGACGTATACGTATTGATTTTAAGACAACCTCAATAGGTAACTG
CGACATTTGCGGTAGGCAGAGCGATGCTCTTTTGGGCTTGATGTCACTCAAAAACTATGGTGTTCAATACGTCATGTGGC
GCCATCCTCTAACACCTTACCGTCTGCCGCTTAAAGAGGGTGGAGATTTTTACTCAGTTAAACCACAACCTGGTGGTTTA
ATCTGGCGCGACTGGTTAGGCCTCATAGAGGTAGGTAACTCAAAAAACAATACTGAACTCCCCGCACAGGTCGTGAAACT
TTTGAATGCCAGCAATCTAAAGCAGACAAGGGTGGGCTTATGGGGATTTGGTTTTGATTTTGAAGATATGAAGGTTCGTT
GTTGGTATGAACACCATTTCCCGCTGTTGTTAAACAAAAAAGAAGACCTAATACCTAAGTTGCGTCTGGCAGCGCAAGCG
GCATCACACATTCTAAGCTTGTTACACCGAGCGTTGAAAGAAGCATGGTTCTCTGAGAAGAAAACCACAAAGCTTGATTT
CGGTTTTGTGGATATTGACTTCTGGAACAAAACTCAGCATCGATTCCTGAGATTAGTGCGCAAAATTGAAGAAGGTCAGG
ATCCGGACGAATTACTCAGTAAATGGCAAAAGGAAATGTGGTTATTCGCGCGTCAGGATTTTGACGATCGTGTCTTTACC
AATCCATATGAGCCCGTTGATTTGGAACGCGTCATGACCGCACGCAAGAAATATTTTACAACATCAGCGGAGAAGCAAAA
TGCTAACGCCGCCAGGGAGAAAAAGCAGGAGGCTGCTGAATGA

Upstream 100 bases:

>100_bases
TGAGATGTCTGCGACAAGACTCTCTGAATAGTTGATATACAGAAAAGGATGGAAGGATGGACAACCGACCTGGGATGGTC
TTTTTTACGAGAGGATGCGT

Downstream 100 bases:

>100_bases
GTATTGTAAAAGATGAGCATAAAGTTGCGCTGCGTAAATGGCATGAAGAGTTGCAGGATAAACGCGGCGAGCGTGCCAGT
CTGCGGCGTAGTACGACGGT

Product: cytoplasmic protein

Products: NA

Alternate protein names: CRISPR-Associated Cse1 Family Protein; Cytoplasmic Protein; Cse1 Family CRISPR-Associated Protein; CRISPR-Associated Protein; Crispr-Associated Protein Cse1 Family

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEK
LREALLSLEHAFQFGPDSPSFMQDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDE
QVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGL
IWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQA
ASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPDELLSKWQKEMWLFARQDFDDRVFT
NPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE

Sequences:

>Translated_520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEK
LREALLSLEHAFQFGPDSPSFMQDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDE
QVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGL
IWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQA
ASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPDELLSKWQKEMWLFARQDFDDRVFT
NPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
>Mature_520_residues
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDQRSWDDIWEDGLEAEK
LREALLSLEHAFQFGPDSPSFMQDFDELKVKATFIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNA
PIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDE
QVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGL
IWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQA
ASHILSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPDELLSKWQKEMWLFARQDFDDRVFT
NPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=310, Percent_Identity=23.2258064516129, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59653; Mature: 59653

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSF
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
APKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFDELKVKATFIASLLP
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNAPIGGRGYYPGLRGGGPLTTL
CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCHHHHH
IELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDE
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECHH
QVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPY
HHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCC
RLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGL
CCCCCCCCCEEEECCCCCCEEHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCHHHHCEE
WGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQAASHILSLLHRALKEAWFSEK
EECCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPDELLSKWQKEMWLFARQDFDDRVFT
CCCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
NPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
CCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSF
CCCCCEEECCCEEEEECCCCCCCEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
APKDQRSWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFDELKVKATFIASLLP
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNAPIGGRGYYPGLRGGGPLTTL
CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCHHHHH
IELLEYQGNQQTPLWRKLWLNVMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDE
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEECHH
QVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPY
HHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCC
RLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGL
CCCCCCCCCEEEECCCCCCEEHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCCHHHHCEE
WGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQAASHILSLLHRALKEAWFSEK
EECCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KTTKLDFGFVDIDFWNKTQHRFLRLVRKIEEGQDPDELLSKWQKEMWLFARQDFDDRVFT
CCCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
NPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
CCCCCCCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA