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The map label for this gene is ygcB [H]

Identifier: 82545166

GI number: 82545166

Start: 2768114

End: 2769523

Strand: Direct

Name: ygcB [H]

Synonym: SBO_2759

Alternate gene names: 82545166

Gene position: 2768114-2769523 (Clockwise)

Preceding gene: 82545165

Following gene: 82545167

Centisome position: 61.24

GC content: 52.34

Gene sequence:

>1410_bases
ATGATGGCAGTGATGCCGTTTAAACATAATAATCTGCGGCTTCTGGGGCTGAGTAACAAAATCCTGCTGGCTGATGAGAT
CCACGCCTGTGACGCTTATATGTCGTGCATTCTTGAAGGGCTGATCGAGCGGCAGGCGCGTGGCGGAAACAGCGTTATTT
TGCTTTCTGCTACGTTATCTCAACAGCAGCGCGACAAACTCGTCGCCGCCTTTGCGCGTGGTGCAGAGGGCCAGCAAGAA
GCCCCACTCCTGGGAAAAGATGATTACCCCTGGCTGACGCATGTCACGAAAACCGATGTACATTCGCACCGGGTAGCGAC
GCGCAAAGAAGTTGAACGTAGCGTGAGCGTGGGTTGGCTCCATAGTGAACAAGAGTGTATTGCGCGTATCGAATCGGCGG
TAAGTCAGGGGAAATGCATCGCCTGGATTCGGAATTCTGTTGATGACGCTATTCAGGTGTATCGTCAGCTGCTTGCCCGC
GGCGTCATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGCGATCGCCAGCGAATTGAAACGGAAAC
GCTGGCACGCTTTGGTAAATATTGTAGTTTACAGAGAGCGTCTCAAGTCATTGTTTGTACACAAGTAATTGAACAAAGCG
TGGATATTGACCTGGACGAAATGATCTCCGACCTGGCCCCCATTGATTTGCTAATCCAGCGAGCGGGGCGATTACAGCGG
CATATCCGCGATATTAATGGTCAGTTAAAGCGTGACGGAAAAGACGAGCGTTCCCCCCCTGAATTGCTGATTCTGGCCCC
CGTCTGGGATGACGCTCCTGGTGACGAATGGTTCGGCAGTGCCATGCGTAACAGTGCATATGTCTATCCCGATCATGGGC
GAATCTGGCTGACGCAGCGTGTGCTGCGTGAGCAAGGCGCTATTCAGATGCCGCACGCAGCCCGGCTTCTTATTGAATCA
GTTTACGGTGAGGACGTGGTAATGCCGGAAGGATTTGCCCGCAGCGAGCAGGAGCAAGTGGGCAAATATTACTGTGATCG
CGCAAGGGCTAAAAAGTATGTGCTGAACTTCAGGCTCGGCTATGCCGCCAATATCAACGATTACCTTCCGGAAAAACTGT
CGACACGTCTGGCTGAAGAGTCTGTTTCCCTGTGGCTGGCTACCTGTATTGACGGTGTGGTGAAGCCTTATGCCACCGGT
GCTCACGCATGGGAAATGAGCGTTGTCAGAGTGCGCCGAAGCTGGTGGAAAAAACATCGGGATGAGTTTTCTTTACTGGA
AGGGGATGCGTTCAGGCAGTGGTGCGTTGAACAGCGGCAAGATCCGGAAATGGCAAACGTGATTTTAGTCACCGATGACG
AAAGTTGCGGGTATTCGGCCAGGGAGGGATTGATTGGCAAGGTTGGTTGA

Upstream 100 bases:

>100_bases
GGATGAACAAGCTTTCAGCCAGGGTTGTGCGGCCTAGTTTGCCGACAGTAACAAGAAGGCGTTGCTGGCTGAAATTGGCG
TCGGCACCCTGGATCAGGCG

Downstream 100 bases:

>100_bases
GATGTCTGCGACAAGACTCTCTGAATAGTTGATATACAGAAAAGGATGGAAGGATGGACAACCGACCTGGGATGGTCTTT
TTTACGAGAGGATGCGTATG

Product: helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQE
APLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLAR
GVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQR
HIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIES
VYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATG
AHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG

Sequences:

>Translated_469_residues
MMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQE
APLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLAR
GVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQR
HIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIES
VYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATG
AHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG
>Mature_469_residues
MMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQE
APLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLAR
GVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQR
HIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIES
VYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATG
AHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=377, Percent_Identity=28.6472148541114, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 53100; Mature: 53100

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLS
CEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHC
QQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCEEC
HSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLARGVIPASSLSLFHSRFAFSDR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH
QRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQR
HHHHHCCHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHH
VLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLG
HHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEC
YAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHR
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
DEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG
CHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLS
CEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHC
QQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCEEC
HSEQECIARIESAVSQGKCIAWIRNSVDDAIQVYRQLLARGVIPASSLSLFHSRFAFSDR
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHH
QRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPIDLLIQRAGRLQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
HIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQR
HHHHHCCHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHH
VLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKYVLNFRLG
HHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEC
YAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHR
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
DEFSLLEGDAFRQWCVEQRQDPEMANVILVTDDESCGYSAREGLIGKVG
CHHHHHCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]