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The map label for this gene is kdsD [H]

Identifier: 82545115

GI number: 82545115

Start: 2706143

End: 2706619

Strand: Reverse

Name: kdsD [H]

Synonym: SBO_2703

Alternate gene names: 82545115

Gene position: 2706619-2706143 (Counterclockwise)

Preceding gene: 82545116

Following gene: 82545113

Centisome position: 59.88

GC content: 41.3

Gene sequence:

>477_bases
ATGAACAATACGGATCTTATCCATCTTATTAAACGTTTTATGCGTAACGAACATAAAGCAGTAGAAGAGGTTATTGATTC
CCCCCTTTCGGAAGTCGCGAATTTAATTAAAATATTACAATCTTGCCAGGGAAAAGTTGTTTTTATTGGTGTTGGGAAAT
CTGGCATTATTGCCAGAAAACTTGCTGCAACATTTGCCAGCACCGGAACTCCCTCGTTTTTTGTTCACGGTACGGAAGCG
GTACACGGCGACCTTGGGATGGTGGCGAAAGACGATGTTGTTATTCTTATTTCAAACAGTGGTGAGACGGCGGAAATCCT
GGCGACACTGCCTAGTTTGAAAAAAATGGGTAATTATTTGATCTCTTTTATCCGCAGTCATCACTCATCGCTTGCGATAA
GTTGTGATTTATCTGTTGAAATCCCCGTCAAAAGTGAGGCGGATAATTTAGGTTTGGTAATGCTGCCAACTTACTGA

Upstream 100 bases:

>100_bases
GGCTATCTGCGTCTTAATCTGGCCTGCAGTCGAGAAAAATTATATATGGGGCTTGCGCGCCTTGCGAGTGTAATTAAAAA
TATTAATCAGGAAAAAGAAA

Downstream 100 bases:

>100_bases
TTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGG
CGTGGTGCGTAACGGCAAAA

Product: isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNLGLVMLPTY

Sequences:

>Translated_158_residues
MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNLGLVMLPTY
>Mature_158_residues
MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQGKVVFIGVGKSGIIARKLAATFASTGTPSFFVHGTEA
VHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYLISFIRSHHSSLAISCDLSVEIPVKSEADNLGLVMLPTY

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=111, Percent_Identity=58.5585585585586, Blast_Score=122, Evalue=8e-30,
Organism=Escherichia coli, GI87082151, Length=110, Percent_Identity=45.4545454545455, Blast_Score=96, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 17019; Mature: 17019

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQGKVVFIGVGKSGIIARK
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
LAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYL
HHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ISFIRSHHSSLAISCDLSVEIPVKSEADNLGLVMLPTY
HHHHHHCCCCEEEEECCEEEECCCCCCCCCCEEEECCC
>Mature Secondary Structure
MNNTDLIHLIKRFMRNEHKAVEEVIDSPLSEVANLIKILQSCQGKVVFIGVGKSGIIARK
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
LAATFASTGTPSFFVHGTEAVHGDLGMVAKDDVVILISNSGETAEILATLPSLKKMGNYL
HHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ISFIRSHHSSLAISCDLSVEIPVKSEADNLGLVMLPTY
HHHHHHCCCCEEEEECCEEEECCCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]