| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yeiQ [H]
Identifier: 82544609
GI number: 82544609
Start: 2127305
End: 2128771
Strand: Reverse
Name: yeiQ [H]
Synonym: SBO_2152
Alternate gene names: 82544609
Gene position: 2128771-2127305 (Counterclockwise)
Preceding gene: 161984913
Following gene: 82544608
Centisome position: 47.1
GC content: 51.33
Gene sequence:
>1467_bases ATGAAGACAATTGCCTCCGTTACGCTCCCGCATCATGTACACGCTCCACGCTACGATCGCCAGCAGTTGCAATCACGTAT CGTTCATTTTGGCTTTGGCGCCTTTCACCGCGCTCATCAGGCGTTACTGACCGATCGTGTGCTGAATGCCCAGGGCGGCG ACTGGGGGATCTGTGAAATCAGCTTGTTCAGCGGTGATCAACTGATGAGCCAGCTCCGCGCACAGAACCATTTATATACC GTGCTGGAGAAAGGTGCGGACGGCAATCAGGTGATAATTGTCGGTGCCGTTCACGAATGCCTTAATGCAAAACTGGATTC CTTAGCGGCAATTATTGAGAAATTTTGCGAGCCACAGGTGGCAATTGTTTCCCTGACGATTACCGAAAAAGGCTATTGTA TTGACCCGGCCACCGGTGCACTCGACACCAGTAATCCGCGGATTATTCACGATCTACAAACCCCTGAAGAACCTCACTCC GCACCGGGTATTCTCGTCGAAGCACTGAAACGCCGCCGTGAGCGCAGCCTTACACCGTTTACCGTGCTCTCCTGCGACAA TATTCCCGACAATGGCCATGTGGTGAAAAACGCGGTGCTGAGAATGGCAGAAAAACGTTCGCCAGAACTCGCCGGGTGGA TAAAAGAACACGTCAGTTTTCCGGGAACCATGGTCGACCGCATTGTTCCGGCTGCAACCGACGAATCACTGGCAGAAATC AGCCAGCATCTGGGGGTAAATGATCCCTGCGCGATTAGCTGCGAACCGTTTATCCAGTGGGTGGTTGAAGATAACTTCAT CGCTGGGCGTCCTGCCTGGGAAGTCGCAGGTGTACAAATGGTGAATGATGTCCTGCCATGGGAAGAGATGAAACTGCGTA TGCTTAATGGCAGCCACTCTTTTCTCGCTTATCTGGGTTACCTCTCAGGATTCGCCTATATCAGTGATTGCATGCAGGAT CGCGTATTTCGCTATGCTGCCAGAACATTAATGCTGGATGAGCAAGCGCCGACACTGCAAATTAAAGATGTCGATTTAAC ACAATATGCGGATAAGTTAATTGCACGTTTTGCTAATCCGTCGCTGAAACATAAGACCTGGCAAATCGCGATGGATGGCA GCCAGAAATTACCGCAACGTATGCTGGCAGGTATTCGCATACATCTGGGGCGCGAAACGGACTGGTCGTTGCTGGCATTA GGCGTTGCTGGCTGGATGCGTTACGTCAGCGGCGTTGATGATGCCGGAAATGCCATTGATGTTCGCGATCCGCTTAGCGA TAAAATTCGCGAACTTGTTGCGGGCAGCAGCAGTGAACAACGCGTAACCGCCCTGCTTTCCCTGCGTGAAGTTTTCGGTG ATGATCTGCCAGATAACCCGCATTTTGTGCAGGCCATCGAACAAGCCTGGCAACAAATCGTACAATTCGGCGCACATCAG GCGCTATTAAACACCCTCAAAATTTAA
Upstream 100 bases:
>100_bases CCTCACACTTCATCGCATTAACAATCCAGACCAATTTCAATTGCTGTCATATAACTTTACACTGTCATTGTTAATTTATC GTTACTAAGACGTGACTCCT
Downstream 100 bases:
>100_bases CGATTTCTGCGGTTAAAGCGGATGAAGCTCACCTTCGTCCGCTCTCCCCTTCTCTTTTCTGCCTTTTTTAGCCAGGATTA ACGCTCAGTTAACTTACCAG
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 488
Protein sequence:
>488_residues MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYT VLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS APGILVEALKRRRERSLTPFTVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLAEI SQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAYISDCMQD RVFRYAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANPSLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRETDWSLLAL GVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ ALLNTLKI
Sequences:
>Translated_488_residues MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYT VLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS APGILVEALKRRRERSLTPFTVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLAEI SQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAYISDCMQD RVFRYAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANPSLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRETDWSLLAL GVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ ALLNTLKI >Mature_488_residues MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYT VLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS APGILVEALKRRRERSLTPFTVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLAEI SQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAYISDCMQD RVFRYAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANPSLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRETDWSLLAL GVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ ALLNTLKI
Specific function: Unknown
COG id: COG0246
COG function: function code G; Mannitol-1-phosphate/altronate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannitol dehydrogenase family. UxuB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788497, Length=488, Percent_Identity=97.9508196721311, Blast_Score=993, Evalue=0.0, Organism=Escherichia coli, GI1790779, Length=485, Percent_Identity=55.6701030927835, Blast_Score=552, Evalue=1e-158, Organism=Escherichia coli, GI1787823, Length=464, Percent_Identity=54.3103448275862, Blast_Score=544, Evalue=1e-156, Organism=Escherichia coli, GI1790028, Length=232, Percent_Identity=28.8793103448276, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI48994885, Length=485, Percent_Identity=22.8865979381443, Blast_Score=99, Evalue=7e-22, Organism=Saccharomyces cerevisiae, GI6324401, Length=492, Percent_Identity=39.2276422764228, Blast_Score=359, Evalue=1e-100, Organism=Saccharomyces cerevisiae, GI6320765, Length=492, Percent_Identity=39.2276422764228, Blast_Score=359, Evalue=1e-100,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR013328 - InterPro: IPR000669 - InterPro: IPR013118 - InterPro: IPR023027 - InterPro: IPR013131 - InterPro: IPR016040 [H]
Pfam domain/function: PF01232 Mannitol_dh; PF08125 Mannitol_dh_C [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 54243; Mature: 54243
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00974 MANNITOL_DHGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEI CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE SLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQV EECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCE AIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHSAPGILVEALKRRRERSLTPF EEEEEEEECCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCE TVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLAEI EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHH SQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHS HHHCCCCCCCEECHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH FLAYLGYLSGFAYISDCMQDRVFRYAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHHHCCC SLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRETDWSLLALGVAGWMRYVSGVDDAGNAID CCCCCEEEEEECCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE VRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHH ALLNTLKI HHHHHHCC >Mature Secondary Structure MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLTDRVLNAQGGDWGICEI CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE SLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLNAKLDSLAAIIEKFCEPQV EECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCE AIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHSAPGILVEALKRRRERSLTPF EEEEEEEECCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCE TVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHVSFPGTMVDRIVPAATDESLAEI EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHH SQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVAGVQMVNDVLPWEEMKLRMLNGSHS HHHCCCCCCCEECHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHH FLAYLGYLSGFAYISDCMQDRVFRYAARTLMLDEQAPTLQIKDVDLTQYADKLIARFANP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHHHCCC SLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRETDWSLLALGVAGWMRYVSGVDDAGNAID CCCCCEEEEEECCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE VRDPLSDKIRELVAGSSSEQRVTALLSLREVFGDDLPDNPHFVQAIEQAWQQIVQFGAHQ CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHH ALLNTLKI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]