| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is ychG [H]
Identifier: 82544310
GI number: 82544310
Start: 1808826
End: 1809365
Strand: Direct
Name: ychG [H]
Synonym: SBO_1830
Alternate gene names: 82544310
Gene position: 1808826-1809365 (Clockwise)
Preceding gene: 82544309
Following gene: 82544312
Centisome position: 40.02
GC content: 54.44
Gene sequence:
>540_bases ATGGCTCTTCCGCCAGACCGCACAGACAGGGGCGCGGAACGTTACCTGAAGGATGACTGGCACGGCCTGCAACTTTTTGC CATTGATGGCGCACAGTTCAGGACACCTGATAAACCCGAGCTGCGTGAATATTATGGGTCTGCCAACACATCCACTAAGC GGCAGAACGCCTACCCGGTTATGCGTCTGGTGGCCTTAATGAACCTGGGAAGTCACATTCTGCTGAATGCCGTGACCGCA CCTTACCGGCAGAGCGAAACTGTGCTGGCCCACTCCATGCTCGCCACCATCCCGGATAACTCTATTACGTTGTTTGATAA GCTTTTTTACAGCGAAGACCTGCTGCTAACGCTGAACCAGAAGGGTTGTAACCGCCACTGGCTACTGCCTGCGTGGAAGG AATATCGCATCAGAAATGATAGAGCTGGGAAACACGGCGTCACCAGGGACCATCCCGAAACGACTGGAGCATCTTCGGGG TGCTCTGGAAGTGGTGTTCATAACAAAACGCCCCCGACCATCAAGGCCGAGGTCGGTTAA
Upstream 100 bases:
>100_bases GCCGTCTGAACCTGAGCGCGGATGGCGAAGCGGGGATGAACCTGCTGGCCCGCAGCGCTGTCACCCAAGCGCGTCAGCGC GTGGGGGCCGCCCCAGTGGA
Downstream 100 bases:
>100_bases GATATCAAAAACCCGTTATCCTGTGAAACATAGTGCCGCTCCTCTTAAGTGAACGGCATTGCCCTTCTGGGGCCGTATTT TTTGTTTACCCAAAGCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTA PYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKEYRIRNDRAGKHGVTRDHPETTGASSG CSGSGVHNKTPPTIKAEVG
Sequences:
>Translated_179_residues MALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTA PYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKEYRIRNDRAGKHGVTRDHPETTGASSG CSGSGVHNKTPPTIKAEVG >Mature_178_residues ALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAP YRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKEYRIRNDRAGKHGVTRDHPETTGASSGC SGSGVHNKTPPTIKAEVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790729, Length=131, Percent_Identity=38.1679389312977, Blast_Score=77, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 20035; Mature: 19904
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPV CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHH MRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQ HHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHCCCEEEEECC KGCNRHWLLPAWKEYRIRNDRAGKHGVTRDHPETTGASSGCSGSGVHNKTPPTIKAEVG CCCCCEECCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC >Mature Secondary Structure ALPPDRTDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPV CCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHH MRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQ HHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHCCCEEEEECC KGCNRHWLLPAWKEYRIRNDRAGKHGVTRDHPETTGASSGCSGSGVHNKTPPTIKAEVG CCCCCEECCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7773397; 8905232; 9097039; 9278503 [H]