| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
Click here to switch to the map view.
The map label for this gene is 82544225
Identifier: 82544225
GI number: 82544225
Start: 1722587
End: 1723177
Strand: Direct
Name: 82544225
Synonym: SBO_1743
Alternate gene names: NA
Gene position: 1722587-1723177 (Clockwise)
Preceding gene: 82544222
Following gene: 82544226
Centisome position: 38.11
GC content: 42.13
Gene sequence:
>591_bases GTGATTAATCAACTGGCAGATAAACAAACCATTAAACAAACTTTATTTGCCCGTCAGCCAGCAAAAATCCACAAACCCTA TCCAACTAATAGCAAGATTATTATGGGAGATGTACTGAATCATGCAGCACTGAAGCAGGCCATGCAGGGACAGGACGTTG TGTATGCCAACCTTACGGGGGAAGATTTAGATATTCAGGCAAATTCAGTGATCGCTGCGATGAAAGCCTGTGATGTTAAA CGTCTGATCTTTGTTCTTTCCCTCGGTATTTATGATGAAGTTCCAGGAAAATTTGGCGAATGGAATAATGCAGTTATTGG TGAGCCCCTAAAACCATTCCGCAGGGCTGCGGATGCAATTGAGGCTTCTGGACTGGAATATACAATTCTTCGCCCTGCCT GGCTGACTGATGAAGATATTATTGATTATGAGCTTACCTCACGCAATGAACCATTCAAAGGTACGATCGTATCACGTAAG AGTGTCGCAGCATTAATCACAGATATCATCGATAAACCTGAGAAACACATTGGTGAGAATATAGGTATCAATCAACCCGT GACTGATGGTGACAAGCCATTATTCATGTAA
Upstream 100 bases:
>100_bases ACTCTTTAGAGTAACGTTGGTTTTTTCTGCTCATTATTAGCTCCTTCTGATGCCATTCTATTTCAGGAAGGAGTGTCCGT TAAACTCAGGCTACCTCAAT
Downstream 100 bases:
>100_bases ATCAATTACATAGTTACCATCGTAATGTACTATGTGCAGTACGATTTATTAAACTTATTAAGGTGAACTGATCAATCCGA TGCGATTAACATGTGTAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NAD-Dependent Epimerase/Dehydratase; Saccharopine Dehydrogenase Related Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase; NADH-Flavin Reductase; NmrA Family Protein; Saccharopine Dehydrogenase Or Related Protein; Saccharopine Dehydrogenase
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVK RLIFVLSLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRK SVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM
Sequences:
>Translated_196_residues MINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVK RLIFVLSLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRK SVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM >Mature_196_residues MINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVK RLIFVLSLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRK SVAALITDIIDKPEKHIGENIGINQPVTDGDKPLFM
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21718; Mature: 21718
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQAMQGQDVVYANLTG CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCC EDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAI CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH EASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGEN HHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHCCCHHHCCCC IGINQPVTDGDKPLFM CCCCCCCCCCCCCCCC >Mature Secondary Structure MINQLADKQTIKQTLFARQPAKIHKPYPTNSKIIMGDVLNHAALKQAMQGQDVVYANLTG CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCC EDLDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAI CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH EASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGEN HHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCEEECHHHHHHHHHHHHCCCHHHCCCC IGINQPVTDGDKPLFM CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA