Click here to switch to the map view.

The map label for this gene is flhC [H]

Identifier: 82543635

GI number: 82543635

Start: 1119849

End: 1120415

Strand: Direct

Name: flhC [H]

Synonym: SBO_1115

Alternate gene names: 82543635

Gene position: 1119849-1120415 (Clockwise)

Preceding gene: 82543634

Following gene: 82543636

Centisome position: 24.78

GC content: 48.68

Gene sequence:

>567_bases
ATGAGTGAAAAAAGCATTGTTCAGGAAGCGCGGGATATTGAATTGATCACCCTGGGCGCTCGTTTGCAGATGCTGGAAAG
CGAAACACAGTTAAGTCGCGGACGCCTGATAAAACTTTATAAAGAACTGCGCGGAAGCCCACCGCCGAAAGGCATGCTGC
CATTCTCAACCGACTGGTTTATGACCTGGGAACAAAACGTTCATGCTTCGATGTTCTGTAATGCATGGCAGTTTTTACTG
AAAACAGGTTTGTGTAATGGCGTCGATGCGGTGATCAAAGCCTACCGTTTATACCTTGAACAGTGCCCACAAGCAGAAGA
AGGACCACTGCTGGCATTAACCCGTGCCTGGACATTGGTGCGGTTTGTTGAAAGTGGATTACTGCAACTTTCCAGCTGCA
ACTGCTGCGGCGGCAATTTTATTACCCACGCTCACCAGCCTGTTGGCAGCTTTGCCTGCAGCTTATGTCAACCGCCATCC
CGGGCAGTAAAAAGACGTAAACTTTCCCAGAATCCTGCCGATATTATCCCACAACTGCTGGATGAACAGAGAGTACAGGC
TGTTTAA

Upstream 100 bases:

>100_bases
ACGATCTCCAGCAAATTCATACCGGCATCATGCTCTCAACACGCTTGCTGAATGATGTTAATCAGCCTGAAGAAGCGCTG
CGCAAGAAAAGGGCCTGATC

Downstream 100 bases:

>100_bases
CTGATACGGTGTGGCGCAACATGCCAGCAGCGGTAACGACGTACCGCTGCTTTTTTTTGCCCCAATCGCGCGTTAACGCC
TGACGACTGAACATCCTGTC

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLL
KTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
RAVKRRKLSQNPADIIPQLLDEQRVQAV

Sequences:

>Translated_188_residues
MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLL
KTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPS
RAVKRRKLSQNPADIIPQLLDEQRVQAV
>Mature_187_residues
SEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK
TGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSR
AVKRRKLSQNPADIIPQLLDEQRVQAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=192, Percent_Identity=97.9166666666667, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21123; Mature: 20992

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWF
CCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
MTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLV
EECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQLL
HHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
DEQRVQAV
HHHHHHCC
>Mature Secondary Structure 
SEKSIVQEARDIELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWF
CHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
MTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLYLEQCPQAEEGPLLALTRAWTLV
EECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
RFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPPSRAVKRRKLSQNPADIIPQLL
HHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
DEQRVQAV
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]