Definition Shigella boydii Sb227, complete genome.
Accession NC_007613
Length 4,519,823

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The map label for this gene is yehQ [H]

Identifier: 82543489

GI number: 82543489

Start: 976673

End: 978673

Strand: Direct

Name: yehQ [H]

Synonym: SBO_0945

Alternate gene names: 82543489

Gene position: 976673-978673 (Clockwise)

Preceding gene: 82543488

Following gene: 82543490

Centisome position: 21.61

GC content: 54.92

Gene sequence:

>2001_bases
ATGAATTCACTACGTCCGGAATTATTAGAACTGACACCGCAGGCCCTGACGGCGTTAAGCAATGCCGGTTTTGTTAAGCG
CAGTCTTAAGGAACTGGAAAATGGCAACGTCCCAGAGATCAGCCATGAGAACGGCGCTTTAATCGCCACCTTCAGTGACG
GTGTCCGTACCCAGCTGGCGAACGGCCAGGCACTGAAAGAGGCTCAGTGCAGCTGCGGGGCCAGCGGTATGTGCCGTCAT
CGCGTGATGCTGGTGTTAAGTTATCAACGACTTTGTGCTACCGCCCAGCCTACGGGAAAAGAAGAGGAATGGGATCCGGC
AATCTGGCTGGAAGAACTGGCTACCCTTCCCGATGCCACCCGCAAACGCGCACAGGCGCTGGTCGCTAAAGGCATCACCA
TTGAGTTGTTCTGTGCGCCGGGTGAAATTCCCTCTGCCCGCTTACCGATGAGCGATGTGCGTTTTTATTCCCGCAGCAGT
ATTCGTTTCGCCCGTTGTGATTGTATTGAAGGCACACTTTGCGAACATGTCGTACTGGCAGTACAGGCCTTTGTCCAGGC
AAAAGCGCAGCAAGCGGAATTGACTCATTTAATCTGGCAGATGCGCAGCGAACACGTCACATCATCTGACGATCCGTTTG
CCAGCGAAGAAGGCAAAACGTGTCGTCAATATGTTCAACAACTAAGCCAGGCATTATGGCTGAGCGGCATCAGCCAGCCG
CTTATTCACTACGAGGCCGCTTTCAGCCGCGCGCAGCAAGCAGCGGAACGCTGCAGCTGGCGATGGGTGAGTGAATCGCT
ACGGCAACTGCGCGCCAGCGTTGATGCCTTCCACGCCCGCGCCAGCCACTATCATGCCGGAGAATGCTTACGTCAGCTTG
CGGCATTAAACAGTCGATTAAACTGCGCACAAGAGATGGCCCGGCGCGACAGTGTTGGTGAAGTTCCTCCTGTGCCGTGG
CGCACGGTCGTTGGCTCTGGCATTGCCGGAGAAGCAAAGCTTGATCATCTGCGGCTGGTGTCTTTAGGTATGCGTTGCTG
GCAGGATATTGAGCATTATGGTTTACGCATCTGGTTTACCGATCCCGACACCGGCAGTATTTTGCATCTTTCGCGTAGTT
GGCCGCGAAGTGAACAGGAAAACTCACCGGCAGCTACGCGTCGGCTGTTTAGTTTTCAGGCTGGCGCACTGGCGGGTGGG
CAAATTGTTTCACAAGCAGCAAAACGCAGTGCCGATGGCGAGCTGCTGTTAGCTACCCGCAACCGCTTAAGCAGCGTTGT
GCCGCTGTCGCCAGACGCCTGGCTAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTAC
GCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTGGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCA
CTCGGTTGGGACAGCGGCCGCCAGACGCTGGATGCGCAGGTAATCAGCGGCGAAGGTGAAGATAATCTGCTGACGTTATC
CCTTCCGGCATCTGCCTGTTCTCCTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTC
TGGTTTCTGGCTTTGTCAGCTTTGTAGAGGGGCAATTGACACTGGAACCACGGGTGATGATGACAAAAACCCGTGCCTGG
GCGCTGGACGCGGAAACTGCGCCTGTGGCACCGCTACCTTCTGCCAGCGTTTTGCCTGTGCCGTCTACCGCTCATCAGTT
GCTGATGCGCTGCCAGGCGTTACTTATTCAACTGCTCCATAACGGCTGGCGCTATCAGGAACAGAGCGCTATTAGTCAGG
CAGAGTTGCTGGCGAATGACCTCACCGCGGTGGGTTTTTATCGGCTGGCACATGTGTTGGTACAATTTCGTAATACAGAA
AGCGAGGCACGGGTAGAAGCAATGAATAACGGTGTTTTGCTTTGCGAACAATTATTCCCCATGCTTCAGCAACAAGGATG
A

Upstream 100 bases:

>100_bases
ATGACCGCGATACGGCCCAGGCGCTGGTTAATGTCGGCGCACAAATAGCCGCCATGACACCGGGCGAGCTGGCATCATGG
CTTGCGGAGAATCTTCAGTC

Downstream 100 bases:

>100_bases
AATAGTGCTTTTTACTAAGAGTTCTACTCCAGTTCCGGACTGCTCACGCCACGGTATTAGGCATATCCTATATAGCCCCT
GGTGAGAGTCACCAGTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLANGQALKEAQCSCGASGMCRH
RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP
LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPW
RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGG
QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWLMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
LGWDSGRQTLDAQVISGEGEDNLLTLSLPASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAW
ALDAETAPVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAVGFYRLAHVLVQFRNTE
SEARVEAMNNGVLLCEQLFPMLQQQG

Sequences:

>Translated_666_residues
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLANGQALKEAQCSCGASGMCRH
RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP
LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPW
RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGG
QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWLMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
LGWDSGRQTLDAQVISGEGEDNLLTLSLPASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAW
ALDAETAPVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAVGFYRLAHVLVQFRNTE
SEARVEAMNNGVLLCEQLFPMLQQQG
>Mature_666_residues
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLANGQALKEAQCSCGASGMCRH
RVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDATRKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSS
IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP
LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRLNCAQEMARRDSVGEVPPVPW
RTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGG
QIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWLMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
LGWDSGRQTLDAQVISGEGEDNLLTLSLPASACSPFAVERMAALLQQTDDPVSLVSGFVSFVEGQLTLEPRVMMTKTRAW
ALDAETAPVAPLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAISQAELLANDLTAVGFYRLAHVLVQFRNTE
SEARVEAMNNGVLLCEQLFPMLQQQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 SWIM-type zinc fingers [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007527 [H]

Pfam domain/function: PF04434 SWIM [H]

EC number: NA

Molecular weight: Translated: 73442; Mature: 73442

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50966 ZF_SWIM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLA
CCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHC
NGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDAT
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHH
RKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHVVLA
HHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
VQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT
HHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR
CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEH
NRLSSVVPLSPDAWLMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
HHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHCCHHHHCCEEEEEHHHHHH
LGWDSGRQTLDAQVISGEGEDNLLTLSLPASACSPFAVERMAALLQQTDDPVSLVSGFVS
CCCCCCCCEECCEEECCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
FVEGQLTLEPRVMMTKTRAWALDAETAPVAPLPSASVLPVPSTAHQLLMRCQALLIQLLH
HHCCCEEECCCEEEEECHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NGWRYQEQSAISQAELLANDLTAVGFYRLAHVLVQFRNTESEARVEAMNNGVLLCEQLFP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHHH
MLQQQG
HHHCCC
>Mature Secondary Structure
MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHENGALIATFSDGVRTQLA
CCCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHC
NGQALKEAQCSCGASGMCRHRVMLVLSYQRLCATAQPTGKEEEWDPAIWLEELATLPDAT
CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHH
RKRAQALVAKGITIELFCAPGEIPSARLPMSDVRFYSRSSIRFARCDCIEGTLCEHVVLA
HHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
VQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEGKTCRQYVQQLSQALWLSGISQP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
LIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDAFHARASHYHAGECLRQLAALNSRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NCAQEMARRDSVGEVPPVPWRTVVGSGIAGEAKLDHLRLVSLGMRCWQDIEHYGLRIWFT
HHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
DPDTGSILHLSRSWPRSEQENSPAATRRLFSFQAGALAGGQIVSQAAKRSADGELLLATR
CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEH
NRLSSVVPLSPDAWLMLSAPLRQPGIVALREYLRQRPPACIRPLNQVDNLFILPVAECIS
HHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHCCHHHHCCEEEEEHHHHHH
LGWDSGRQTLDAQVISGEGEDNLLTLSLPASACSPFAVERMAALLQQTDDPVSLVSGFVS
CCCCCCCCEECCEEECCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
FVEGQLTLEPRVMMTKTRAWALDAETAPVAPLPSASVLPVPSTAHQLLMRCQALLIQLLH
HHCCCEEECCCEEEEECHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NGWRYQEQSAISQAELLANDLTAVGFYRLAHVLVQFRNTESEARVEAMNNGVLLCEQLFP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHHH
MLQQQG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]