| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is gltJ [H]
Identifier: 82543097
GI number: 82543097
Start: 535220
End: 535960
Strand: Reverse
Name: gltJ [H]
Synonym: SBO_0517
Alternate gene names: 82543097
Gene position: 535960-535220 (Counterclockwise)
Preceding gene: 82543098
Following gene: 82543096
Centisome position: 11.86
GC content: 52.09
Gene sequence:
>741_bases ATGTCTATAGACTGGAACTGGGGTATTTTTTTACAACAAGCCCCGTTCGGCAACACCACCTATCTTGGTTGGATCTGGAG TGGTTTTCAGGTGACGATCGCTTTGTCGATCTGCGCCTGGATTATCGCTTTCCTCGTCGGTTCATTTTTCGGCATTTTAC GTACCGTTCCAAACCGTTTTCTCTCCGGTCTGGGTACGTTGTATGTCGAACTGTTCCGCAACGTGCCGTTGATTGTGCAA TTCTTTACCTGGTATCTGGTGATCCCGGAGCTGTTGCCGGAGAAAATCGGCATGTGGTTTAAGGCCGAGCTGGATCCCAA TATTCAGTTTTTCCTTTCATCCATGCTCTGCCTGGGGCTGTTTACCGCCGCCCGTGTTTGCGAACAGGTACGCGCCGCCA TTCAGTCGTTGCCGCGTGGGCAAAAAAATGCCGCGCTGGCGATGGGCCTGACGCTACCGCAGGCTTATCGATACGTACTG CTGCCTAATGCTTATCGCGTTATCGTCCCGCCGATGACTTCCGAGATGATGAACCTGGTGAAAAACTCCGCCATCGCCTC GACTATTGGTCTGGTGGATATGGCGGCGCAGGCGGGTAAATTGCTTGATTACTCAGCCCACGCCTGGGAGTCGTTTACCG CTATTACGCTGGCGTATGTGTTGATTAACGCGATTATCATGCTGGTAATGACGCTGGTTGAACGTAAAGTTCGCCTGCCT GGCAACATGGGGGGCAAATAA
Upstream 100 bases:
>100_bases ATGGTCGTTCCCCATCGGGCCTGAAAACCGCAATACGCTGGGTAACAATCTTCGAGGGTAGCAGTTAACGCTGCTACCCT CTTTTTTCTGGAGTAGATTT
Downstream 100 bases:
>100_bases TGTACGAGTTTGACTGGAGTTCCATTGTCCCTTCCCTGCCATATCTGCTCGACGGGCTGGTGATCACGCTGAAAATCACC GTCACGGCAGTCGTGATTGG
Product: glutamate-aspartate transport system permease
Products: ADP; phosphate; L-glutamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQ FFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAIIMLVMTLVERKVRLP GNMGGK
Sequences:
>Translated_246_residues MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQ FFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAIIMLVMTLVERKVRLP GNMGGK >Mature_245_residues SIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQF FTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLL PNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAIIMLVMTLVERKVRLPG NMGGK
Specific function: Part of the binding-protein-dependent transport system for aspartate/glutamate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786874, Length=246, Percent_Identity=99.5934959349593, Blast_Score=497, Evalue=1e-142, Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=30.5555555555556, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI48994930, Length=123, Percent_Identity=39.8373983739837, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=26.046511627907, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=23.4741784037559, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788645, Length=217, Percent_Identity=28.110599078341, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787086, Length=218, Percent_Identity=26.605504587156, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788646, Length=221, Percent_Identity=28.5067873303167, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI87082239, Length=131, Percent_Identity=28.2442748091603, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787087, Length=222, Percent_Identity=23.8738738738739, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 27469; Mature: 27338
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRF CCCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH FTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLV HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAIIMLVMTLVERKVRLP HHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNMGGK CCCCCC >Mature Secondary Structure SIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAFLVGSFFGILRTVPNRF CCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKAELDPNIQFFLSSMLCLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH FTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVLLPNAYRVIVPPMTSEMMNLV HHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLAYVLINAIIMLVMTLVERKVRLP HHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNMGGK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamate [Periplasm] + H2O = ADP + phosphate + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]