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The map label for this gene is ygcF [C]

Identifier: 78780168

GI number: 78780168

Start: 1676087

End: 1676764

Strand: Direct

Name: ygcF [C]

Synonym: PMT9312_1783

Alternate gene names: 78780168

Gene position: 1676087-1676764 (Clockwise)

Preceding gene: 78780167

Following gene: 78780169

Centisome position: 98.06

GC content: 31.42

Gene sequence:

>678_bases
ATGAAAATGACAAATTTTTTACCCTTAGTCGAACAATTTCATTCATTACAAGGTGAAGGCTATCATGCTGGGAAAAGTGC
TTTTTTTGTAAGATTAGCTGGTTGTGAAGTTGGGTGCTCATGGTGCGACACCAAGCATTCATGGGATGAGAATAAATACC
CCTCAGTATCAATTGAAAAAATAATAGACCGAATAAAAATTGCCAGGGAGCAAGGGGCGTCCTTTTGCGTTATTACAGGT
GGCGAACCATTACAACATAACTTGGATAAGTTTTGCAAAGCCATAAAGCAAATGAAGATGGGAAAAGAGCAAAACTCAAT
GAAAATTCATATTGAAACAAGTGGAGTAAATTCGATATCAGGAAGTTATGACTGGATTACTTTATCTCCTAAAAGACACT
CACCTCCAAAAAATTATTTTTTAAAAAACTGTAATGAAATAAAAATAATCATAAATGAAAAAGAAGATATTGAATTTGCG
ATCCAAATAAAAAAAGAAATTTTAAAACAATATGAATTCTCAAAAATAGAAGATAGCTTAAAAAAAGAAGATAAAATTTT
TTATTTACAACCAGCTTGGAACAATAAAGATGGGTTTTCTCTTGCTATTGATTTCGTAAAAAATAACCCCGATTGGAAAT
TGAGCCTTCAAACTCACAAATACTTGAAAATTAAATGA

Upstream 100 bases:

>100_bases
TTTATCAAGACCTGGCAAACCTCATCCTTTATTTAAAGGCTTAATAAAATCCTCTCAAGAAAACTTAACTCAATCAAATT
AATATTCCTTATTTGTTTGA

Downstream 100 bases:

>100_bases
AATTATATGACTCTTAAAAATAAATCAATAGTAGTTTTGTTATCGGGAGGATTAGATTCCTCTACTGTGACTAGTATCGC
AAAAAAATCCGAAGCTAAAA

Product: putative organic radical activating protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGCEVGCSWCDTKHSWDENKYPSVSIEKIIDRIKIAREQGASFCVITG
GEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFA
IQIKKEILKQYEFSKIEDSLKKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK

Sequences:

>Translated_225_residues
MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGCEVGCSWCDTKHSWDENKYPSVSIEKIIDRIKIAREQGASFCVITG
GEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFA
IQIKKEILKQYEFSKIEDSLKKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK
>Mature_225_residues
MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGCEVGCSWCDTKHSWDENKYPSVSIEKIIDRIKIAREQGASFCVITG
GEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSGVNSISGSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFA
IQIKKEILKQYEFSKIEDSLKKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=239, Percent_Identity=33.0543933054393, Blast_Score=117, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26057; Mature: 26057

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGCEVGCSWCDTKHSWDENKYPSVSIEK
CCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
IIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSGVNSIS
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
GSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKKEILKQYEFSKIEDSL
CCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHH
KKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK
CCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEECEEEEEC
>Mature Secondary Structure
MKMTNFLPLVEQFHSLQGEGYHAGKSAFFVRLAGCEVGCSWCDTKHSWDENKYPSVSIEK
CCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHH
IIDRIKIAREQGASFCVITGGEPLQHNLDKFCKAIKQMKMGKEQNSMKIHIETSGVNSIS
HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
GSYDWITLSPKRHSPPKNYFLKNCNEIKIIINEKEDIEFAIQIKKEILKQYEFSKIEDSL
CCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHH
KKEDKIFYLQPAWNNKDGFSLAIDFVKNNPDWKLSLQTHKYLKIK
CCCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]