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The map label for this gene is apl [H]

Identifier: 78780102

GI number: 78780102

Start: 1604561

End: 1605220

Strand: Reverse

Name: apl [H]

Synonym: PMT9312_1717

Alternate gene names: 78780102

Gene position: 1605220-1604561 (Counterclockwise)

Preceding gene: 78780103

Following gene: 78780100

Centisome position: 93.92

GC content: 26.97

Gene sequence:

>660_bases
TTGAATTTAATTTTTATAAATTTTCTTACTTCAATCCCTGACTATATTAGTTTGGCTGTTGAAAAGAATTCAACAATTGC
ATACCTAACAATTTGTTTGGCTATGTTTTTAGAAAACATAATACCTCCAATCCCTTCAGAAATAATAATGCCGTTGGGAG
GATTTTTTGTTTATCAACAAAAATTAAATTTCTACATTTTAGTTTTTTGGGGGTTATTAGGAACGATTCTAGGATCATTG
CCTTGGTATTACTTAGGTAGATTAGTAAATGAAAAAAGACTTTCAATTTTTTTAGATAAAAAAGGAAAATATTTAGGAAT
TTCTTCTAATGATTTAAATAAAAGTAAAAGGTGGTTTGATAAATACGGGGTTTCTTTAGTTTTTTGGGGCCGATTAGTAC
CAGGTATAAGAACGTTAATTTCAGTTCCTGCTGGTATAGAACTTATGCCATTAAGAAAATTCTTGATTTGGACTACATTT
GGTAGCTTTATATGGGTCGCACTTCTCACTTATGCAGGATATTTATTTGGTGAAAATTATCCAATAATTGAAACTTATTT
AGATCAAATCAAATATTTTGTAAAGCCAATTTTAATTTTAATTTTCTTATATTTTTTTATAAAACTACTTATTAGATTTT
TAAAAAACAATAGAGCTTAG

Upstream 100 bases:

>100_bases
AAATTGGTGCAAAATTAACAAAATTAACTGAAGAACAGGCTGATTATATTAATGTTTCTGTTGAAGGTCCTTATAAACCA
GAGCTTTATAGATACTAAGT

Downstream 100 bases:

>100_bases
AAAGGGATTTCGCTGGAGTTACTACTGTTGTTAGAATATTGGTTATTTTCAGATTCTTTTCGGGAGCTTAGTAAGTTTAA
TCTATCTACCCTAACAACTG

Product: DedA family alkaline phosphatase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNLIFINFLTSIPDYISLAVEKNSTIAYLTICLAMFLENIIPPIPSEIIMPLGGFFVYQQKLNFYILVFWGLLGTILGSL
PWYYLGRLVNEKRLSIFLDKKGKYLGISSNDLNKSKRWFDKYGVSLVFWGRLVPGIRTLISVPAGIELMPLRKFLIWTTF
GSFIWVALLTYAGYLFGENYPIIETYLDQIKYFVKPILILIFLYFFIKLLIRFLKNNRA

Sequences:

>Translated_219_residues
MNLIFINFLTSIPDYISLAVEKNSTIAYLTICLAMFLENIIPPIPSEIIMPLGGFFVYQQKLNFYILVFWGLLGTILGSL
PWYYLGRLVNEKRLSIFLDKKGKYLGISSNDLNKSKRWFDKYGVSLVFWGRLVPGIRTLISVPAGIELMPLRKFLIWTTF
GSFIWVALLTYAGYLFGENYPIIETYLDQIKYFVKPILILIFLYFFIKLLIRFLKNNRA
>Mature_219_residues
MNLIFINFLTSIPDYISLAVEKNSTIAYLTICLAMFLENIIPPIPSEIIMPLGGFFVYQQKLNFYILVFWGLLGTILGSL
PWYYLGRLVNEKRLSIFLDKKGKYLGISSNDLNKSKRWFDKYGVSLVFWGRLVPGIRTLISVPAGIELMPLRKFLIWTTF
GSFIWVALLTYAGYLFGENYPIIETYLDQIKYFVKPILILIFLYFFIKLLIRFLKNNRA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=207, Percent_Identity=27.536231884058, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25504; Mature: 25504

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIFINFLTSIPDYISLAVEKNSTIAYLTICLAMFLENIIPPIPSEIIMPLGGFFVYQQ
CCEEEEEHHHHCHHHHEEHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
KLNFYILVFWGLLGTILGSLPWYYLGRLVNEKRLSIFLDKKGKYLGISSNDLNKSKRWFD
HCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHEEEEECCCCEECCCCCCCCHHHHHHH
KYGVSLVFWGRLVPGIRTLISVPAGIELMPLRKFLIWTTFGSFIWVALLTYAGYLFGENY
HHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PIIETYLDQIKYFVKPILILIFLYFFIKLLIRFLKNNRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLIFINFLTSIPDYISLAVEKNSTIAYLTICLAMFLENIIPPIPSEIIMPLGGFFVYQQ
CCEEEEEHHHHCHHHHEEHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHH
KLNFYILVFWGLLGTILGSLPWYYLGRLVNEKRLSIFLDKKGKYLGISSNDLNKSKRWFD
HCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHEEEEECCCCEECCCCCCCCHHHHHHH
KYGVSLVFWGRLVPGIRTLISVPAGIELMPLRKFLIWTTFGSFIWVALLTYAGYLFGENY
HHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PIIETYLDQIKYFVKPILILIFLYFFIKLLIRFLKNNRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]