Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 78780083

GI number: 78780083

Start: 1587084

End: 1587623

Strand: Direct

Name: rimM

Synonym: PMT9312_1698

Alternate gene names: 78780083

Gene position: 1587084-1587623 (Clockwise)

Preceding gene: 78780081

Following gene: 78780086

Centisome position: 92.86

GC content: 25.37

Gene sequence:

>540_bases
ATGATAAATAATAATAAATGGCTGGTTGTTGGATTAATAACATCATGTCATGGAATTAATGGACAATTAAAAGTTAAATC
TTTAAGTGATTTTGAAGAAAGATTTTTAAAACCAGGAATTAGATGGTTGCAAAAAGAAAATGAACCCCCTTCAAAAATAG
AACTTACCTCTGGTTTCAAACAGCCTGGGAAAGAAACCTTTATCATTAAGCTCCAAGGAATAAATAATAGAAATCAAGCA
GAGCGACTTAAAAAATGTAAAATTCTTGTAAAAACTAATAAACTACCAAAATTAAAAAAGGAAGAATTCCACTTGTTGGA
ACTTATAAATTTGGAAGTGAAGACTTTAGAAAATGAAGAATTAAAAATAATTGGGAAAGTTATTAATTTAGAAAATGAGA
AAAATAATTTACTTGTTGTTGAACTATTTAAAAATAAAAAAAAAGTTCTAATACCATTTGTTAAAGAAATTGTTCCATTA
GTAGATATAAAAAATAATTTTCTAATCATCAATCCTCCAAATGGACTTTTAGATCTATAA

Upstream 100 bases:

>100_bases
ATCCTCTGTATATAGAGTTAGTGTCTTTTACAACAACAAAAGAACCAGGGAGAATGGGTTTATTCGATAATTCCATAAAA
CATTTTATCTAATACAATAT

Downstream 100 bases:

>100_bases
ATTTTAAAAGATAAAAGTTTGTAAGAAACTAATTATTCCACAGTTACACTTTTAGCTAAATTTCTTGGTTGATCTACGTC
AAGTCCTCTATGAGCTGCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFKQPGKETFIIKLQGINNRNQA
ERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEELKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLDL

Sequences:

>Translated_179_residues
MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFKQPGKETFIIKLQGINNRNQA
ERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEELKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLDL
>Mature_179_residues
MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFKQPGKETFIIKLQGINNRNQA
ERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEELKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPL
VDIKNNFLIINPPNGLLDL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=183, Percent_Identity=27.3224043715847, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROM9 (Q318D6)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_398195.1
- ProteinModelPortal:   Q318D6
- SMR:   Q318D6
- STRING:   Q318D6
- GeneID:   3766523
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_1698
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   PRK00122
- BioCyc:   PMAR74546:PMT9312_1698-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20652; Mature: 20652

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFK
CCCCCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
QPGKETFIIKLQGINNRNQAERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEE
CCCCEEEEEEEECCCCCCHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCC
LKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPLVDIKNNFLIINPPNGLLDL
EEEEEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC
>Mature Secondary Structure
MINNNKWLVVGLITSCHGINGQLKVKSLSDFEERFLKPGIRWLQKENEPPSKIELTSGFK
CCCCCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
QPGKETFIIKLQGINNRNQAERLKKCKILVKTNKLPKLKKEEFHLLELINLEVKTLENEE
CCCCEEEEEEEECCCCCCHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHCCEEEECCCCC
LKIIGKVINLENEKNNLLVVELFKNKKKVLIPFVKEIVPLVDIKNNFLIINPPNGLLDL
EEEEEEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHEECCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA