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The map label for this gene is ygfF [C]

Identifier: 78779736

GI number: 78779736

Start: 1267165

End: 1267980

Strand: Direct

Name: ygfF [C]

Synonym: PMT9312_1352

Alternate gene names: 78779736

Gene position: 1267165-1267980 (Clockwise)

Preceding gene: 78779735

Following gene: 78779737

Centisome position: 74.14

GC content: 32.35

Gene sequence:

>816_bases
TTGAAAAATTTTGATTTAAAAGAAGGTTACTATATTGTTACCGGCGGTCTTGGATTACTGGGGAAACAACATTGTGAAGC
TATAAGTAAATTCGGTGGTACCCCAATAATAATTGACATAAACCACTTAGAATTTCAAGATTTTTATAGGTATTTATTAA
AAAAATATAACAAAAAGGCAGTTTTATTTGAGAATGATATTACGAATGAAAAATCGGTTAAAGAAGTTGTTGATAAATGC
AAAGCCTTAGATTATAAGATACATGGCTTGATTAATAATGCCGCTAGAGATCCCAAAGTTACTGAAGGTGGGCTTAAAAA
TAAAAACAGATTGGAAATATTTCCTATAGAAGAGTGGAACAAAGATTTATCTGTAGGTTTAACAGGCGCATATCTATGTA
CTAAATATTTTGGATCTTATATGAATAAAAATTATGGAGGAGCAATTGTAAATATTTCTTCCGACTTAGGCTTGATAGCA
CCTAATCAAGAACTTTATAAAGAAGATACACTTAATTCTGAAAATCAGCCTGTAAAACCAGTTACATATTCAGTAGTTAA
AAGTGGTCTAATTGGCTTAACAAGATATACTGCTACCTATTGGCCCAAAAAAGTAAGGTGCAATTGTTTATGTCCAGGGG
GAGTTTACAATCACCAAAATGAGTCCTTCTTGAATAAGGTTTCTAATTTAATTCCAATGGGAAGACTTGCTAATAAAGAT
GAATATATGCCCGCTATTGTATTCATGTTAAGCGAAGCTTCTTCATATATGAATGGCGCCATTTTATCAATTGACGGTGG
GCGATCTACCTGGTAA

Upstream 100 bases:

>100_bases
TATATCTAAATTTGCAGTATTTTTATCATCTCCCTTAGCATCATTTATAAATGGTTCATGTATTAAAATTGATGGTGGCC
AATCAACTTATACTTAGAAA

Downstream 100 bases:

>100_bases
TTTAACTATGAATTTTAGAAGAACAAAACAAAAAATAAATGATTTTAAAGGATTTATTATCGTAAAAATAATCATAAATA
ATTTTCTTTTTCAAGATTCT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKNFDLKEGYYIVTGGLGLLGKQHCEAISKFGGTPIIIDINHLEFQDFYRYLLKKYNKKAVLFENDITNEKSVKEVVDKC
KALDYKIHGLINNAARDPKVTEGGLKNKNRLEIFPIEEWNKDLSVGLTGAYLCTKYFGSYMNKNYGGAIVNISSDLGLIA
PNQELYKEDTLNSENQPVKPVTYSVVKSGLIGLTRYTATYWPKKVRCNCLCPGGVYNHQNESFLNKVSNLIPMGRLANKD
EYMPAIVFMLSEASSYMNGAILSIDGGRSTW

Sequences:

>Translated_271_residues
MKNFDLKEGYYIVTGGLGLLGKQHCEAISKFGGTPIIIDINHLEFQDFYRYLLKKYNKKAVLFENDITNEKSVKEVVDKC
KALDYKIHGLINNAARDPKVTEGGLKNKNRLEIFPIEEWNKDLSVGLTGAYLCTKYFGSYMNKNYGGAIVNISSDLGLIA
PNQELYKEDTLNSENQPVKPVTYSVVKSGLIGLTRYTATYWPKKVRCNCLCPGGVYNHQNESFLNKVSNLIPMGRLANKD
EYMPAIVFMLSEASSYMNGAILSIDGGRSTW
>Mature_271_residues
MKNFDLKEGYYIVTGGLGLLGKQHCEAISKFGGTPIIIDINHLEFQDFYRYLLKKYNKKAVLFENDITNEKSVKEVVDKC
KALDYKIHGLINNAARDPKVTEGGLKNKNRLEIFPIEEWNKDLSVGLTGAYLCTKYFGSYMNKNYGGAIVNISSDLGLIA
PNQELYKEDTLNSENQPVKPVTYSVVKSGLIGLTRYTATYWPKKVRCNCLCPGGVYNHQNESFLNKVSNLIPMGRLANKD
EYMPAIVFMLSEASSYMNGAILSIDGGRSTW

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=274, Percent_Identity=22.2627737226277, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=26.7399267399267, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=24.4186046511628, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=266, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787335, Length=274, Percent_Identity=24.8175182481752, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789208, Length=275, Percent_Identity=24, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082160, Length=274, Percent_Identity=25.1824817518248, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082100, Length=272, Percent_Identity=23.8970588235294, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=265, Percent_Identity=27.1698113207547, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24639444, Length=264, Percent_Identity=25, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397609, Length=277, Percent_Identity=25.9927797833935, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=26.6393442622951, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30430; Mature: 30430

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFDLKEGYYIVTGGLGLLGKQHCEAISKFGGTPIIIDINHLEFQDFYRYLLKKYNKKA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCE
VLFENDITNEKSVKEVVDKCKALDYKIHGLINNAARDPKVTEGGLKNKNRLEIFPIEEWN
EEEECCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHCC
KDLSVGLTGAYLCTKYFGSYMNKNYGGAIVNISSDLGLIAPNQELYKEDTLNSENQPVKP
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCCCCCCH
VTYSVVKSGLIGLTRYTATYWPKKVRCNCLCPGGVYNHQNESFLNKVSNLIPMGRLANKD
HHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
EYMPAIVFMLSEASSYMNGAILSIDGGRSTW
CHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
>Mature Secondary Structure
MKNFDLKEGYYIVTGGLGLLGKQHCEAISKFGGTPIIIDINHLEFQDFYRYLLKKYNKKA
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCE
VLFENDITNEKSVKEVVDKCKALDYKIHGLINNAARDPKVTEGGLKNKNRLEIFPIEEWN
EEEECCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHCC
KDLSVGLTGAYLCTKYFGSYMNKNYGGAIVNISSDLGLIAPNQELYKEDTLNSENQPVKP
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCHHHHHHHCCCCCCCCCCH
VTYSVVKSGLIGLTRYTATYWPKKVRCNCLCPGGVYNHQNESFLNKVSNLIPMGRLANKD
HHHHHHHHCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
EYMPAIVFMLSEASSYMNGAILSIDGGRSTW
CHHHHHHHHHHHHHHHHCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]