Click here to switch to the map view.

The map label for this gene is rnpA

Identifier: 78779668

GI number: 78779668

Start: 1191830

End: 1192216

Strand: Direct

Name: rnpA

Synonym: PMT9312_1285

Alternate gene names: 78779668

Gene position: 1191830-1192216 (Clockwise)

Preceding gene: 78779667

Following gene: 78779669

Centisome position: 69.73

GC content: 29.72

Gene sequence:

>387_bases
ATGGCCTTACCTAAAGATATGCGATTGAAAGGTCATAGGACTTTTAATTATATTCATAAAAATTCCATAAAATATCATGG
GAAATTAATGACTTTTAAAGTAGCAAGATCAAATCCAGAAATCCTCTTATCCCATAATCACACAAATGCCTCAAACAATT
TCAGGGCTGCAATAGCTATCAGTAAAAAAGTTTCTAAAAAAGCTGTAGATAGAAATAAAATAAGGAGAATACTGCAAGAG
TGGTTAATAACAAATATCCCGAAAATTAATAGCCACAAACCTTATTGGTTACTTGTTAACCTTAAATTTGGAGATTTCTG
CAATGATAAAAATAAACTTTTGGAGGAATTTCAAAACTTAATGTTCAAATCTCGACTAATCAAATGA

Upstream 100 bases:

>100_bases
CGGTTTTAGAGTAAGAATGCGTTCTCATACTGGTAGAAGAGTTATTAAAAGCAGAAGACAAAAAGGTAGAGAAAGAATAG
CTGTCTAACCTAAAATTCAA

Downstream 100 bases:

>100_bases
TTAACATGAACGAAGAAACATTTTACGAAGGTGGTCCTGCAAAAAGTGATTTAATAATAAATCTACTTGCAGGCGTAACT
CTTCTTGGTTTGCCATTTAC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MALPKDMRLKGHRTFNYIHKNSIKYHGKLMTFKVARSNPEILLSHNHTNASNNFRAAIAISKKVSKKAVDRNKIRRILQE
WLITNIPKINSHKPYWLLVNLKFGDFCNDKNKLLEEFQNLMFKSRLIK

Sequences:

>Translated_128_residues
MALPKDMRLKGHRTFNYIHKNSIKYHGKLMTFKVARSNPEILLSHNHTNASNNFRAAIAISKKVSKKAVDRNKIRRILQE
WLITNIPKINSHKPYWLLVNLKFGDFCNDKNKLLEEFQNLMFKSRLIK
>Mature_127_residues
ALPKDMRLKGHRTFNYIHKNSIKYHGKLMTFKVARSNPEILLSHNHTNASNNFRAAIAISKKVSKKAVDRNKIRRILQEW
LITNIPKINSHKPYWLLVNLKFGDFCNDKNKLLEEFQNLMFKSRLIK

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_PROM9 (Q319V1)

Other databases:

- EMBL:   CP000111
- RefSeq:   YP_397780.1
- ProteinModelPortal:   Q319V1
- STRING:   Q319V1
- GeneID:   3766093
- GenomeReviews:   CP000111_GR
- KEGG:   pmi:PMT9312_1285
- HOGENOM:   HBG728160
- OMA:   MRLKGHR
- ProtClustDB:   CLSK919642
- BioCyc:   PMAR74546:PMT9312_1285-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 15132; Mature: 15001

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPKDMRLKGHRTFNYIHKNSIKYHGKLMTFKVARSNPEILLSHNHTNASNNFRAAIAI
CCCCCCCCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEE
SKKVSKKAVDRNKIRRILQEWLITNIPKINSHKPYWLLVNLKFGDFCNDKNKLLEEFQNL
HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
MFKSRLIK
HHHHHCCC
>Mature Secondary Structure 
ALPKDMRLKGHRTFNYIHKNSIKYHGKLMTFKVARSNPEILLSHNHTNASNNFRAAIAI
CCCCCCCCCCCCEEEEEECCCEEECCEEEEEEEECCCCCEEEEECCCCCCCCEEEEEEE
SKKVSKKAVDRNKIRRILQEWLITNIPKINSHKPYWLLVNLKFGDFCNDKNKLLEEFQNL
HHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
MFKSRLIK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA