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The map label for this gene is yfhQ [C]

Identifier: 78779450

GI number: 78779450

Start: 977246

End: 977995

Strand: Reverse

Name: yfhQ [C]

Synonym: PMT9312_1067

Alternate gene names: 78779450

Gene position: 977995-977246 (Counterclockwise)

Preceding gene: 78779451

Following gene: 78779449

Centisome position: 57.22

GC content: 27.73

Gene sequence:

>750_bases
ATGATTTTGGGGAAAAATTTTTCTAATTTAAAAGTAATATTAGTTGAACCAAACGGCCCTTTAAATGTTGGGAGTGTAGC
AAGGTTATGCTCCAATTTTGAAGTCGATGAATTAAGAATTGTTTCTCCAAAATGCGATATATTCTCTTTAAAAGCAAAAA
AAATGGCCCTTAAAGGTCAAAAATATCTTGATCATTGCAAAATTTTCGATAATTTAGAAAATGCAATTTTTGATTGTGAT
TTAGTTATCGCATCTTGTGGCAGGATAGATGTTAGTAAAGATTCAGTCTTTGAATCTTCAGAAGATATAGTTAGTTGGAT
TTTATCTTTTGAAAAAATTAATAATTTAGCAATTATATTTGGCAGAGAAGATAGAGGTTTAAGTAATAATGAATTACTTT
TGGCAAATAAGACTTTTAATATACCTACTTCTAAGAATAATCCTTCTTTAAATCTTTCTCATGCAGTTTCAATAGTTTTG
TATGAATTAAATAAGTCTTCTAAAAGAAATTTCAATAAGGAATTAGAAGTTTTTAATCTTGCATCATCAAAACAAATACA
TGATTCATTTGTGGAGATTGAGGAAATGCTTCTTGGAGTTGGATATCTTTTAGAACATACCTCTAAGGCAAAAATAAGTA
AATTTAAGAATTATTTATCACGGGCAAATACAACAATGCACGAAATAAATGTTTTAAGAGGAATTGTCCATCAAATAAAC
TGGTTTTTGAACAATTCAAAAAGGAATTAG

Upstream 100 bases:

>100_bases
TAATAAAACAAGTTACTGGTGGGCTTACTCCTCCCATGCCAAGTTTTGAAATTGATCCTGTAAATATGTCCAATTTGTTA
AAATATCTACATAGCCTTGA

Downstream 100 bases:

>100_bases
GAAGTTATAAATCAAATTAGATTTTATTTCTCTGTAGTTTTAATTTGATAGGGATATTTACTAAAAACATTTTCTGAAGT
AACATCTATTGATTATTTGA

Product: RNA methyltransferase TrmH, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MILGKNFSNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDNLENAIFDCD
LVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVL
YELNKSSKRNFNKELEVFNLASSKQIHDSFVEIEEMLLGVGYLLEHTSKAKISKFKNYLSRANTTMHEINVLRGIVHQIN
WFLNNSKRN

Sequences:

>Translated_249_residues
MILGKNFSNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDNLENAIFDCD
LVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVL
YELNKSSKRNFNKELEVFNLASSKQIHDSFVEIEEMLLGVGYLLEHTSKAKISKFKNYLSRANTTMHEINVLRGIVHQIN
WFLNNSKRN
>Mature_249_residues
MILGKNFSNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCKIFDNLENAIFDCD
LVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIFGREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVL
YELNKSSKRNFNKELEVFNLASSKQIHDSFVEIEEMLLGVGYLLEHTSKAKISKFKNYLSRANTTMHEINVLRGIVHQIN
WFLNNSKRN

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=238, Percent_Identity=26.890756302521, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790865, Length=162, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28183; Mature: 28183

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILGKNFSNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQ
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHHHCCH
KYLDHCKIFDNLENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEE
GREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFNL
ECCCCCCCCCCEEEEECEEECCCCCCCCCEEHHHHEEEEEEECCCCHHCCCCCCEEEEEC
ASSKQIHDSFVEIEEMLLGVGYLLEHTSKAKISKFKNYLSRANTTMHEINVLRGIVHQIN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
WFLNNSKRN
HHHCCCCCC
>Mature Secondary Structure
MILGKNFSNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQ
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEHHHHHHHHCCH
KYLDHCKIFDNLENAIFDCDLVIASCGRIDVSKDSVFESSEDIVSWILSFEKINNLAIIF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEE
GREDRGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNKELEVFNL
ECCCCCCCCCCEEEEECEEECCCCCCCCCEEHHHHEEEEEEECCCCHHCCCCCCEEEEEC
ASSKQIHDSFVEIEEMLLGVGYLLEHTSKAKISKFKNYLSRANTTMHEINVLRGIVHQIN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
WFLNNSKRN
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]