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The map label for this gene is dppB [H]

Identifier: 78779442

GI number: 78779442

Start: 970260

End: 971282

Strand: Reverse

Name: dppB [H]

Synonym: PMT9312_1059

Alternate gene names: 78779442

Gene position: 971282-970260 (Counterclockwise)

Preceding gene: 78779443

Following gene: 78779440

Centisome position: 56.83

GC content: 32.84

Gene sequence:

>1023_bases
ATGAGTAGGAATTTAAATAAACTTTTTAATTATTCTTTATTAAAAATTGCATTAATACCATTAATGTTATGGATAATTTC
TTCATTAGTTTTTATTTTATTGCGAGTTGCCCCTGGCGATCCTGTTGATGCCATACTAGGCTCTGGTGCCAATGAGGTTT
CAAGGGAGATTCTAAGAAATAAATTGGGGCTAAATGAGTCCTTGATAAATCAATATTTTTCATACATAAATGATATTTTG
CACTTAAATTTTGGTCTATCTCTTAGTACTCAAAAGCCAGTTCTAGATATTATTCTAAAGTCATTTCCCGCAAGTCTTGA
GCTTGGTTTATTTTCTATATTAAGTGCAATGATAATTGGATTCCCATTAGGATTTATTGGGTTAAGACATAGGGGTAAAA
AGACTGATTATATTGTGAGAATATTTGGGATTGCTACATATGCGATCCCTCCTTTTTGGGGAGCAATGTTGGCTCAATTA
TTATTTTCTGTGTATTTAAACATTTCCCCAATTGGGGGTAGATTTCCAATCTTTCAGCAACAACCCCAAATTACAGGTTT
TCTAGTTTTAGATAGTATTCTGTCAAATAATATTATTGCTTTAAAAGATAGCCTCTATCATCTTGCACTACCTTCGATTA
CCCTTGGCTTTCTATTAAGTGGTATATTCAGCCGGTCATTAAGAGTGAATTTGGATAAGACATTAAAAAGTGATTATGTT
AATGCCGCTATATGTAGAGGAATATCGAGAAAAAAAATATTTTTAAACCATGCTTTACCTAATGCTCTATTGCCAATTGT
CACTATTTCTGGTTTGACAATGGCTTCATTAGCAGGAGGCGCCCTATTGTTTGAAGTAACTTTTTCATGGCCAGGTATTG
CCTTAAGATTATATGAAGCAATTTCTCAGCGAGACTATACCTTGGTGCAAGGCATTGTAATTTTTACCTCTATGCTCATA
GTTTCTTTGAATCTGTTTGTTGATATTTTAATTGCATATTTAGATCCAAGAATAGAGTACTAA

Upstream 100 bases:

>100_bases
ATTTGGATATCCTCTCAAAAAGCATGGTCTCAAAATAAAATATCAAATCCTATTTTTAATGGTGCAGGGATTATTAGATT
AAGCGATCTTGAGTTAATTC

Downstream 100 bases:

>100_bases
TTTTTTAAAAGTTCTTTTATAGTTTCAAGATCTAAAAGATGGAAATCAAGTCCCAAATCTTTCTGGTTTTTAATTACAGT
AGGGACCTCTTGATCCTTAA

Product: putative ABC transporter, oligopeptides

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSRNLNKLFNYSLLKIALIPLMLWIISSLVFILLRVAPGDPVDAILGSGANEVSREILRNKLGLNESLINQYFSYINDIL
HLNFGLSLSTQKPVLDIILKSFPASLELGLFSILSAMIIGFPLGFIGLRHRGKKTDYIVRIFGIATYAIPPFWGAMLAQL
LFSVYLNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLYEAISQRDYTLVQGIVIFTSMLI
VSLNLFVDILIAYLDPRIEY

Sequences:

>Translated_340_residues
MSRNLNKLFNYSLLKIALIPLMLWIISSLVFILLRVAPGDPVDAILGSGANEVSREILRNKLGLNESLINQYFSYINDIL
HLNFGLSLSTQKPVLDIILKSFPASLELGLFSILSAMIIGFPLGFIGLRHRGKKTDYIVRIFGIATYAIPPFWGAMLAQL
LFSVYLNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLYEAISQRDYTLVQGIVIFTSMLI
VSLNLFVDILIAYLDPRIEY
>Mature_339_residues
SRNLNKLFNYSLLKIALIPLMLWIISSLVFILLRVAPGDPVDAILGSGANEVSREILRNKLGLNESLINQYFSYINDILH
LNFGLSLSTQKPVLDIILKSFPASLELGLFSILSAMIIGFPLGFIGLRHRGKKTDYIVRIFGIATYAIPPFWGAMLAQLL
FSVYLNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYVN
AAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLYEAISQRDYTLVQGIVIFTSMLIV
SLNLFVDILIAYLDPRIEY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=319, Percent_Identity=33.2288401253918, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=36.624203821656, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=31.7365269461078, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1789888, Length=325, Percent_Identity=32.6153846153846, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=32.6007326007326, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=29.1925465838509, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1788504, Length=381, Percent_Identity=26.7716535433071, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37693; Mature: 37562

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNLNKLFNYSLLKIALIPLMLWIISSLVFILLRVAPGDPVDAILGSGANEVSREILRN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNESLINQYFSYINDILHLNFGLSLSTQKPVLDIILKSFPASLELGLFSILSAMIIG
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGFIGLRHRGKKTDYIVRIFGIATYAIPPFWGAMLAQLLFSVYLNISPIGGRFPIFQQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLYEA
HHHHHCCCCHHHEEHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLFVDILIAYLDPRIEY
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRNLNKLFNYSLLKIALIPLMLWIISSLVFILLRVAPGDPVDAILGSGANEVSREILRN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNESLINQYFSYINDILHLNFGLSLSTQKPVLDIILKSFPASLELGLFSILSAMIIG
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGFIGLRHRGKKTDYIVRIFGIATYAIPPFWGAMLAQLLFSVYLNISPIGGRFPIFQQ
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLYEA
HHHHHCCCCHHHEEHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLFVDILIAYLDPRIEY
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]