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The map label for this gene is 78779428

Identifier: 78779428

GI number: 78779428

Start: 958377

End: 959450

Strand: Direct

Name: 78779428

Synonym: PMT9312_1045

Alternate gene names: NA

Gene position: 958377-959450 (Clockwise)

Preceding gene: 78779427

Following gene: 78779429

Centisome position: 56.07

GC content: 40.32

Gene sequence:

>1074_bases
ATGCCTGATATAGAACCATTTAGCCCAAGAGGCATGTTCCACGAGGGATGGACAGCTGAAGTTAGCGATTATGCCATAGC
ATGTGGCTGGGCTCTTAAAGGGAAACAATTTATTGTTGGCGACGTAGCAGGTGGTATTTTTGCATTCGAAGGAGATACTG
GAAAAATTATTTGGAAAAAAGAAAATACTCATTCTGGTGGTCTACTAGCAATGGCAATTCATCCAGAGGGTGAAATTTTT
GTAACATCAGGTCAGGATGGAAATGTTCAAATTTGTAATTGCCATGAAGGTAAAGTTATTAAAACACTTGATCTTGGCAA
AGGTTGGGTAGAACACCTCAAGTGGTCTAATGACGGTTTATTTCTTGCGATAGCTTCCTCAAAAAAAGTATATGTATTTA
ATGAAATTGGTGAAGAGAAATGGATCTCAGAAGACCATCCAAGCACAGTAAGTGCAATAACGTGGTCAAATAAAAATGAG
CTAGCAACTGCTTGCTATGGAAGAGTGACATTCTTTGACATAGTTAATAATAAAACGAATCAAAAACTCGAATGGCAAGG
ATCATTGGTATCTATGGAATTAAGCCCTGATGGAGATATAGTCGCCTGTGGGAGTCAAGACAATTCAGTTCATTTTTGGA
GAAGATCAACAGGAATGGATGCAGAGATGACGGGATACCCTGGCAAACCAAGTCACCTTTCTTTTGATGACAGTGGAAAA
TTACTAGCAACTAGTGGCAGTGAAAGAATTACAGTATGGAGCTTTATAGGAAATGGTCCAGAGGGGACTATGCCAGGAGA
GCTATGTCACCATACAGAACCCATTTCGAGCCTAGCCTTTTCAAATAAAGGTATGCTTGTAGCCTCAGGATCTAGGGATG
GTTCTGTTGTCGCAAGTTTCCTAAAAAATGACGGCAATGGAGACCCAGTTGGGGCTGCATTCGCCGGAGATTTAGTAGGG
GCAATATCCTGGAGACCTGATGATTGTGCACTTGCAGCAGTTAATGCAAAAGGTGTTGTAAATGTATGGAAATTTAAAGT
TCGTACTAACCTTTTTTCAAAGGGATTTAAGTAA

Upstream 100 bases:

>100_bases
CACAACCTGATAAAGAATGGGGTAACGAACCTCGTAGAAATCAACTTGTTTTTATCGGTAGAAATCTAAATGAAAAAGAA
ATGCAAGAAGGCTTTGATAA

Downstream 100 bases:

>100_bases
AAGTAGAAATTGATAAAATTACCAATAGTTAGTTTTTAAATGTCTTTCCATACAAATGACCTCACAGTCATTATCTATCC
CTTTTGGGTGAATATCGCAA

Product: WD-40 repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MPDIEPFSPRGMFHEGWTAEVSDYAIACGWALKGKQFIVGDVAGGIFAFEGDTGKIIWKKENTHSGGLLAMAIHPEGEIF
VTSGQDGNVQICNCHEGKVIKTLDLGKGWVEHLKWSNDGLFLAIASSKKVYVFNEIGEEKWISEDHPSTVSAITWSNKNE
LATACYGRVTFFDIVNNKTNQKLEWQGSLVSMELSPDGDIVACGSQDNSVHFWRRSTGMDAEMTGYPGKPSHLSFDDSGK
LLATSGSERITVWSFIGNGPEGTMPGELCHHTEPISSLAFSNKGMLVASGSRDGSVVASFLKNDGNGDPVGAAFAGDLVG
AISWRPDDCALAAVNAKGVVNVWKFKVRTNLFSKGFK

Sequences:

>Translated_357_residues
MPDIEPFSPRGMFHEGWTAEVSDYAIACGWALKGKQFIVGDVAGGIFAFEGDTGKIIWKKENTHSGGLLAMAIHPEGEIF
VTSGQDGNVQICNCHEGKVIKTLDLGKGWVEHLKWSNDGLFLAIASSKKVYVFNEIGEEKWISEDHPSTVSAITWSNKNE
LATACYGRVTFFDIVNNKTNQKLEWQGSLVSMELSPDGDIVACGSQDNSVHFWRRSTGMDAEMTGYPGKPSHLSFDDSGK
LLATSGSERITVWSFIGNGPEGTMPGELCHHTEPISSLAFSNKGMLVASGSRDGSVVASFLKNDGNGDPVGAAFAGDLVG
AISWRPDDCALAAVNAKGVVNVWKFKVRTNLFSKGFK
>Mature_356_residues
PDIEPFSPRGMFHEGWTAEVSDYAIACGWALKGKQFIVGDVAGGIFAFEGDTGKIIWKKENTHSGGLLAMAIHPEGEIFV
TSGQDGNVQICNCHEGKVIKTLDLGKGWVEHLKWSNDGLFLAIASSKKVYVFNEIGEEKWISEDHPSTVSAITWSNKNEL
ATACYGRVTFFDIVNNKTNQKLEWQGSLVSMELSPDGDIVACGSQDNSVHFWRRSTGMDAEMTGYPGKPSHLSFDDSGKL
LATSGSERITVWSFIGNGPEGTMPGELCHHTEPISSLAFSNKGMLVASGSRDGSVVASFLKNDGNGDPVGAAFAGDLVGA
ISWRPDDCALAAVNAKGVVNVWKFKVRTNLFSKGFK

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 WD repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020472
- InterPro:   IPR011600
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00656 Peptidase_C14; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 38535; Mature: 38403

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDIEPFSPRGMFHEGWTAEVSDYAIACGWALKGKQFIVGDVAGGIFAFEGDTGKIIWKK
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEE
ENTHSGGLLAMAIHPEGEIFVTSGQDGNVQICNCHEGKVIKTLDLGKGWVEHLKWSNDGL
CCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHEEECCCCE
FLAIASSKKVYVFNEIGEEKWISEDHPSTVSAITWSNKNELATACYGRVTFFDIVNNKTN
EEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEECCCCC
QKLEWQGSLVSMELSPDGDIVACGSQDNSVHFWRRSTGMDAEMTGYPGKPSHLSFDDSGK
CEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEECCCCCCCCEECCCCCCC
LLATSGSERITVWSFIGNGPEGTMPGELCHHTEPISSLAFSNKGMLVASGSRDGSVVASF
EEEECCCCEEEEEEEECCCCCCCCCHHHHHCCCCHHHHHCCCCCEEEECCCCCHHHHHHH
LKNDGNGDPVGAAFAGDLVGAISWRPDDCALAAVNAKGVVNVWKFKVRTNLFSKGFK
HHCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEEHHHHHCCCC
>Mature Secondary Structure 
PDIEPFSPRGMFHEGWTAEVSDYAIACGWALKGKQFIVGDVAGGIFAFEGDTGKIIWKK
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEE
ENTHSGGLLAMAIHPEGEIFVTSGQDGNVQICNCHEGKVIKTLDLGKGWVEHLKWSNDGL
CCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHEEECCCCE
FLAIASSKKVYVFNEIGEEKWISEDHPSTVSAITWSNKNELATACYGRVTFFDIVNNKTN
EEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEEECCCCC
QKLEWQGSLVSMELSPDGDIVACGSQDNSVHFWRRSTGMDAEMTGYPGKPSHLSFDDSGK
CEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCEECCCCCCCCEECCCCCCC
LLATSGSERITVWSFIGNGPEGTMPGELCHHTEPISSLAFSNKGMLVASGSRDGSVVASF
EEEECCCCEEEEEEEECCCCCCCCCHHHHHCCCCHHHHHCCCCCEEEECCCCCHHHHHHH
LKNDGNGDPVGAAFAGDLVGAISWRPDDCALAAVNAKGVVNVWKFKVRTNLFSKGFK
HHCCCCCCCCCHHHHCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEEHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]